fgenesh1_pg.C_scaffold_1378000001 (Phytophthora ramorum)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_1378000001 T13761_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1378000001 CCHC ZF 255 272

Links

Other CCHC ZF family RBPs
Other Phytophthora ramorum RBPs

9 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_1682000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1682000001 N 1.000
s_475569 Phytophthora sojae s_475569 N 0.889
s_451916 Phytophthora sojae s_451916 N 0.833
AT3G61330 Arabidopsis thaliana AT3G61330-TAIR-G N 0.722
AT5G13205 Arabidopsis thaliana AT5G13205-TAIR-G N 0.722
AT3G59720 Arabidopsis thaliana AT3G59720-TAIR-G N 0.722
AT1G48710 Arabidopsis thaliana AT1G48710-TAIR-G N 0.722
AT1G11265 Arabidopsis thaliana AT1G11265-TAIR-G N 0.722
AT1G58140 Arabidopsis thaliana AT1G58140-TAIR-G N 0.722