AT3G59720 (Arabidopsis thaliana)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 AT3G59720-TAIR-G T09381_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G59720.1-P CCHC ZF 279 296

Links

Other CCHC ZF family RBPs
Other Arabidopsis thaliana RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G11265 Arabidopsis thaliana AT1G11265-TAIR-G N 1.000
AT1G48710 Arabidopsis thaliana AT1G48710-TAIR-G N 1.000
AT1G58140 Arabidopsis thaliana AT1G58140-TAIR-G N 1.000
AT5G13205 Arabidopsis thaliana AT5G13205-TAIR-G N 1.000
AT3G61330 Arabidopsis thaliana AT3G61330-TAIR-G N 1.000
s_451916 Phytophthora sojae s_451916 N 0.833
nasonia_NCBI_hmm139164 Nasonia vitripennis nasonia_NCBI_hmm139164 N 0.778
nasonia_NCBI_hmm253074 Nasonia vitripennis nasonia_NCBI_hmm253074 N 0.722
nasonia_NCBI_hmm110394 Nasonia vitripennis nasonia_NCBI_hmm110394 N 0.722
nasonia_NCBI_hmm88784 Nasonia vitripennis nasonia_NCBI_hmm88784 N 0.722
ZCCHC2 Erinaceus europaeus ENSEEUG00000008744 N 0.722
ZCCHC2 Canis familiaris ENSCAFG00000000073 N 0.722
ZCCHC2 Equus caballus ENSECAG00000014990 N 0.722
PMAA_102830 Penicillium marneffei PMAA_102830 N 0.722
PMAA_015550 Penicillium marneffei PMAA_015550 N 0.722
fgenesh1_pg.C_scaffold_1378000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1378000001 N 0.722
ZCCHC2 Vicugna pacos ENSVPAG00000009934 N 0.722
ZCCHC2 Tursiops truncatus ENSTTRG00000013533 N 0.722
fgenesh1_pg.C_scaffold_1682000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1682000001 N 0.722
ZCCHC2 Felis catus ENSFCAG00000010919 N 0.722
Ame_R005457 Ailuropoda melanoleuca Ame_R005457 N 0.722
s_475569 Phytophthora sojae s_475569 N 0.722
ZCCHC2 Sus scrofa ENSSSCG00000004897 N 0.722