IGS.gm_7_00451 (Chlorella NC64A)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 IGS.gm_7_00451 T14626_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
IGS.gm_7_00451 CCHC ZF 15 32

Links

Other CCHC ZF family RBPs
Other Chlorella NC64A RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ost_04_022_079 Ostreococcus lucimarinus ost_04_022_079 N 0.778
cassava11257.m1 Manihot esculenta cassava11257.m1 N 0.722
29801.m003231 Ricinus communis 29801.m003231 N 0.722
B9HVL9_POPTR Populus trichocarpa POPTR_0010s10750 N 0.722
e_gw1.4.899.1 Ostreococcus RCC809 e_gw1.4.899.1 N 0.722
fgenesh2_pg.C_scaffold_80000055 Selaginella moellendorfii fgenesh2_pg.C_scaffold_80000055 N 0.722
Glyma12g02890.1 Glycine max Glyma12g02890.1 N 0.722
Glyma11g10610.1 Glycine max Glyma11g10610.1 N 0.722
LOC_Os02g52460 Oryza sativa LOC_Os02g52460 N 0.722
estExt_fgenesh1_pg.C_5350001 Physcomitrella patens estExt_fgenesh1_pg.C_5350001 N 0.722
GSVIVG00010231001 Vitis vinifera GSVIVG00010231001 N 0.722
MDP0000277069 Malus x domestica MDP0000277069 N 0.722
LjT04D09.40.nd Lotus japonicus LjT04D09.40.nd N 0.722
Medtr4g100980 Medicago truncatula Medtr4g100980 N 0.722
MDP0000284515 Malus x domestica MDP0000284515 N 0.722
ppa009221m Prunus persica ppa009221m N 0.722
BGIOSIBCE008748 Oryza indica BGIOSIBCE008748 N 0.722
PK15492.1 Cannabis sativa PK15492.1 N 0.722
mgf001569m Mimulus guttatus mgf001569m N 0.722