SNAP_00033377 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 SNAP_00033377 T14972_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SNAP_00033377 CCHC ZF 170 187

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNAP_00039286 Daphnia pulex SNAP_00039286 N 0.944
fgenesh1_pg.C_scaffold_421000001 Daphnia pulex fgenesh1_pg.C_scaffold_421000001 N 0.944
fgenesh1_pg.C_scaffold_93000071 Daphnia pulex fgenesh1_pg.C_scaffold_93000071 N 0.944
SNAP_00021967 Daphnia pulex SNAP_00021967 N 0.944
SNAP_00029886 Daphnia pulex SNAP_00029886 N 0.944
fgenesh1_pg.C_scaffold_26000082 Daphnia pulex fgenesh1_pg.C_scaffold_26000082 N 0.944
fgenesh1_pg.C_scaffold_601000001 Daphnia pulex fgenesh1_pg.C_scaffold_601000001 N 0.944
SNAP_00040202 Daphnia pulex SNAP_00040202 N 0.944
fgenesh1_pg.C_scaffold_253000009 Daphnia pulex fgenesh1_pg.C_scaffold_253000009 N 0.889
PASA_GEN_343200001 Daphnia pulex PASA_GEN_343200001 N 0.889
SNAP_00029509 Daphnia pulex SNAP_00029509 N 0.889
NCBI_GNO_36000001 Daphnia pulex NCBI_GNO_36000001 N 0.889
CHGG_05068 Chaetomium globosum CHGG_05068 N 0.722
NCBI_GNO_2600182 Daphnia pulex NCBI_GNO_2600182 N 0.722
fgenesh1_pg.C_scaffold_195000001 Daphnia pulex fgenesh1_pg.C_scaffold_195000001 N 0.722
CHGG_08708 Chaetomium globosum CHGG_08708 N 0.722
fgenesh1_pg.C_scaffold_64000087 Daphnia pulex fgenesh1_pg.C_scaffold_64000087 N 0.722
CHGG_06812 Chaetomium globosum CHGG_06812 N 0.722
NCBI_GNO_26900002 Daphnia pulex NCBI_GNO_26900002 N 0.722