SNAP_00040202 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 SNAP_00040202 T14987_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SNAP_00040202 CCHC ZF 187 204

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_601000001 Daphnia pulex fgenesh1_pg.C_scaffold_601000001 N 1.000
fgenesh1_pg.C_scaffold_421000001 Daphnia pulex fgenesh1_pg.C_scaffold_421000001 N 1.000
fgenesh1_pg.C_scaffold_26000082 Daphnia pulex fgenesh1_pg.C_scaffold_26000082 N 1.000
fgenesh1_pg.C_scaffold_93000071 Daphnia pulex fgenesh1_pg.C_scaffold_93000071 N 1.000
SNAP_00021967 Daphnia pulex SNAP_00021967 N 1.000
SNAP_00029886 Daphnia pulex SNAP_00029886 N 1.000
SNAP_00039286 Daphnia pulex SNAP_00039286 N 1.000
SNAP_00033377 Daphnia pulex SNAP_00033377 N 0.944
SNAP_00029509 Daphnia pulex SNAP_00029509 N 0.944
PASA_GEN_343200001 Daphnia pulex PASA_GEN_343200001 N 0.944
NCBI_GNO_36000001 Daphnia pulex NCBI_GNO_36000001 N 0.944
fgenesh1_pg.C_scaffold_253000009 Daphnia pulex fgenesh1_pg.C_scaffold_253000009 N 0.944
CHGG_06812 Chaetomium globosum CHGG_06812 N 0.778
NCBI_GNO_26900002 Daphnia pulex NCBI_GNO_26900002 N 0.722
LjSGA_115869.1 Lotus japonicus LjSGA_115869.1 N 0.722
NCBI_GNO_2600182 Daphnia pulex NCBI_GNO_2600182 N 0.722
LjSGA_118711.1 Lotus japonicus LjSGA_118711.1 N 0.722
fgenesh1_pg.C_scaffold_64000087 Daphnia pulex fgenesh1_pg.C_scaffold_64000087 N 0.722
LjSGA_114624.1 Lotus japonicus LjSGA_114624.1 N 0.722
LjSGA_113964.1 Lotus japonicus LjSGA_113964.1 N 0.722
LjSGA_077546.1 Lotus japonicus LjSGA_077546.1 N 0.722
LjSGA_083550.1 Lotus japonicus LjSGA_083550.1 N 0.722
LjSGA_088344.1 Lotus japonicus LjSGA_088344.1 N 0.722
LjSGA_091651.1 Lotus japonicus LjSGA_091651.1 N 0.722
LjSGA_120238.1 Lotus japonicus LjSGA_120238.1 N 0.722
LjSGA_129847.1 Lotus japonicus LjSGA_129847.1 N 0.722
CHGG_05068 Chaetomium globosum CHGG_05068 N 0.722
Minc05817 Meloidogyne incognita Minc05817 N 0.722
Minc00264 Meloidogyne incognita Minc00264 N 0.722
LjSGA_136986.1.1 Lotus japonicus LjSGA_136986.1.1 N 0.722
LjSGA_073314.1 Lotus japonicus LjSGA_073314.1 N 0.722
CHGG_08708 Chaetomium globosum CHGG_08708 N 0.722
LjSGA_130508.1 Lotus japonicus LjSGA_130508.1 N 0.722
LjSGA_132918.1 Lotus japonicus LjSGA_132918.1 N 0.722
fgenesh1_pg.C_scaffold_195000001 Daphnia pulex fgenesh1_pg.C_scaffold_195000001 N 0.722
e_gw1.4.1014.1 Myceliophthora thermophila e_gw1.4.1014.1 N 0.722
LjSGA_133570.1 Lotus japonicus LjSGA_133570.1 N 0.722