CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBG11894
(
Caenorhabditis briggsae
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
CBG11894
T16722_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG11894
CSD
60
131
GLQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSNTEKFYLRTLADEEDIVFDLVEGKNGPEAANVTGP
Links
Other
CSD
family RBPs
Other
Caenorhabditis briggsae
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN20898
Caenorhabditis brenneri
CBN20898
N
0.931
CBN22260
Caenorhabditis brenneri
CBN22260
N
0.931
CRE03839
Caenorhabditis remanei
CRE03839
N
0.917
CBG02238
Caenorhabditis briggsae
CBG02238
N
0.917
cey-2
Caenorhabditis elegans
F46F11.2
N
0.903
CBN10862
Caenorhabditis brenneri
CBN10862
N
0.903
CRE03641
Caenorhabditis remanei
CRE03641
N
0.779
cey-3
Caenorhabditis elegans
M01E11.5
N
0.766
CJA04706
Caenorhabditis japonica
CJA04706
N
0.740