YBX1 (Echinops telfairi)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSETEG00000014789 T16846_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.761
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.761
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000011987 CSD 75 140

Links

Other CSD family RBPs
Other Echinops telfairi RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI06324 Xenopus laevis AAI06324 I 0.736
AAH42217 Xenopus laevis AAH42217 I 0.736
AAH41191 Xenopus laevis AAH41191 I 0.736
AAI30161 Xenopus laevis AAI30161 I 0.736
CAA42778 Xenopus laevis CAA42778 I 0.736
Q00436 Xenopus laevis Q00436 I 0.736
P21573 Xenopus laevis P21573 I 0.736
AAA49715 Xenopus laevis AAA49715 I 0.736
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.736
CSDA Homo sapiens ENSG00000060138 I 0.736
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.736
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.736
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.736
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.736
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.736
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.736
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.736
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.736
LOC100065107 Equus caballus ENSECAG00000013777 I 0.736
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.736
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.736
LOC100067336 Equus caballus ENSECAG00000023592 I 0.736
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.736
CSDA Echinops telfairi ENSETEG00000002557 I 0.736
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.736
Csda Dipodomys ordii ENSDORG00000009103 I 0.736
ybx1 Danio rerio ENSDARG00000004757 I 0.736
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.736
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.736
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.736
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.736
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.736
CSDA Cavia porcellus ENSCPOG00000011329 I 0.736
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.736
CSDA Sus scrofa ENSSSCG00000000633 I 0.736
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.736
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.736
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.736
CSDA Monodelphis domestica ENSMODG00000018248 I 0.736
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.736
Ybx1 Mus musculus ENSMUSG00000028639 I 0.736
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.736
CSDA Macaca mulatta ENSMMUG00000022469 I 0.736
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.736
YBX1 Microcebus murinus ENSMICG00000014984 I 0.736
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.736
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.736
CSDA Loxodonta africana ENSLAFG00000017247 I 0.736
Csda Mus musculus ENSMUSG00000030189 I 0.736
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.736
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.736
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.736
Csda Rattus norvegicus ENSRNOG00000005480 I 0.736
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.736
YB-1 Homo sapiens ENSG00000065978 D 0.736
CSDA Pan troglodytes ENSPTRG00000004681 I 0.736
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.736
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.736
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.736
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.736
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.736
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.736
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.732
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.722
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.722
csda Xenopus tropicalis ENSXETG00000016239 I 0.722
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.722
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.722
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.722
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.718
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.718
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.708
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.708
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.708
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.708
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.704
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.704