LOC100396927 (Callithrix jacchus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCJAG00000021660 T16789_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		1.000
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		1.000
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.931
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.931
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.931
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000040311 CSD 90 160
ENSCJAP00000040312 CSD 90 160
ENSCJAP00000040313 CSD 89 159

Links

Other CSD family RBPs
Other Callithrix jacchus RBPs

214 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 1.000
CSDA Pan troglodytes ENSPTRG00000004681 I 1.000
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 1.000
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 1.000
CSDA Pteropus vampyrus ENSPVAG00000006740 I 1.000
Csda Rattus norvegicus ENSRNOG00000005480 I 1.000
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 1.000
CSDA Sus scrofa ENSSSCG00000000633 I 1.000
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 1.000
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 1.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 1.000
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 1.000
CSDA Myotis lucifugus ENSMLUG00000007476 I 1.000
YBX1 Microcebus murinus ENSMICG00000014984 I 1.000
CSDA Macaca mulatta ENSMMUG00000022469 I 1.000
YBX1 Monodelphis domestica ENSMODG00000017214 I 1.000
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 1.000
Csda Mus musculus ENSMUSG00000030189 I 1.000
Ybx1 Mus musculus ENSMUSG00000028639 I 1.000
CSDA Tupaia belangeri ENSTBEG00000012570 I 1.000
CSDA Taeniopygia guttata ENSTGUG00000012047 I 1.000
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 1.000
Q00436 Xenopus laevis Q00436 I 1.000
P21573 Xenopus laevis P21573 I 1.000
CAA42778 Xenopus laevis CAA42778 I 1.000
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 1.000
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 1.000
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 1.000
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 1.000
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 1.000
AAI30161 Xenopus laevis AAI30161 I 1.000
AAI06324 Xenopus laevis AAI06324 I 1.000
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 1.000
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 1.000
YBX1 Vicugna pacos ENSVPAG00000000068 I 1.000
ybx1 Xenopus tropicalis ENSXETG00000013436 I 1.000
AAH42217 Xenopus laevis AAH42217 I 1.000
AAH41191 Xenopus laevis AAH41191 I 1.000
AAA49715 Xenopus laevis AAA49715 I 1.000
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 1.000
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 1.000
CSDA Homo sapiens ENSG00000060138 I 1.000
CSDA Echinops telfairi ENSETEG00000002557 I 1.000
YB-1 Homo sapiens ENSG00000065978 D 1.000
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 1.000
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 1.000
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 1.000
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 1.000
LOC100067336 Equus caballus ENSECAG00000023592 I 1.000
ybx1 Danio rerio ENSDARG00000004757 I 1.000
Csda Dipodomys ordii ENSDORG00000009103 I 1.000
CSDA Cavia porcellus ENSCPOG00000011329 I 1.000
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 1.000
LOC100065107 Equus caballus ENSECAG00000013777 I 1.000
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 1.000
CSDA Gorilla gorilla ENSGGOG00000001352 I 1.000
CSDA Erinaceus europaeus ENSEEUG00000010415 I 1.000
CSDA Loxodonta africana ENSLAFG00000017247 I 1.000
YBX1 Loxodonta africana ENSLAFG00000007597 I 1.000
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.986
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.986
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.986
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.986
CSDA Monodelphis domestica ENSMODG00000018248 I 0.986
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.972
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.972
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.972
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.972
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.972
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.958
YBX2 Canis familiaris ENSCAFG00000016128 I 0.958
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.958
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.958
AAI55915 Xenopus laevis AAI55915 I 0.958
ybx2-a Xenopus laevis AAI69706 D 0.958
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.958
Ybx2 Mus musculus ENSMUSG00000018554 I 0.958
P21574 Xenopus laevis P21574 I 0.958
YBX2 Sus scrofa ENSSSCG00000017938 I 0.958
LOC100072964 Equus caballus ENSECAG00000009996 I 0.958
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.958
AAI69704 Xenopus laevis AAI69704 I 0.958
YBX2 Procavia capensis ENSPCAG00000008019 I 0.958
csda Xenopus tropicalis ENSXETG00000016239 I 0.958
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.958
AAA49716 Xenopus laevis AAA49716 I 0.958
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.958
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.958
AAA49924 Xenopus laevis AAA49924 I 0.944
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.944
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.944
P45441 Xenopus laevis P45441 I 0.944
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.944
AAI55914 Xenopus laevis AAI55914 I 0.944
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.944
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.944
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.944
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.944
YBX2 Homo sapiens ENSG00000006047 D 0.944
YBX2 Sorex araneus ENSSARG00000000488 I 0.944
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.944
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.944
CSDA Procavia capensis ENSPCAG00000001397 I 0.930
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.930
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.930
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.889
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.889
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.889
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.875
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.875
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.873
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.861
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.861
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.861
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.861
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.861
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.861
CSDA Vicugna pacos ENSVPAG00000000876 I 0.859
CSDA Microcebus murinus ENSMICG00000004602 I 0.859
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.851
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.849
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.849
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.847
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.847
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.836
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.836
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.833
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.833
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.833
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.831
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.831
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.819
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.819
PHUM156710 Pediculus humanus PHUM156710 I 0.819
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.819
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.819
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.819
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.808
GL15684 Drosophila persimilis FBgn0153288 I 0.806
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.806
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.806
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.806
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.806
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.806
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.806
PHUM156720 Pediculus humanus PHUM156720 I 0.806
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.806
ISCW005281 Ixodes scapularis ISCW005281 I 0.806
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.806
GK16710 Drosophila willistoni FBgn0218712 I 0.806
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.806
GI13673 Drosophila mojavensis FBgn0136428 I 0.806
GH16919 Drosophila grimshawi FBgn0124390 I 0.806
GF10852 Drosophila ananassae FBgn0087892 I 0.806
GJ14010 Drosophila virilis FBgn0201228 I 0.806
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.795
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.792
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.792
GE20150 Drosophila yakuba FBgn0237472 I 0.792
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.792
YBX1 Sorex araneus ENSSARG00000012628 I 0.792
yps Drosophila melanogaster FBgn0022959 I 0.792
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.792
GD12750 Drosophila simulans FBgn0184477 I 0.792
GM24682 Drosophila sechellia FBgn0179545 I 0.792
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.778
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.778
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.778
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.778
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.778
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.778
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.778
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.778
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.778
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.767
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.764
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.764
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.764
AAEL001375 Aedes aegypti AAEL001375 I 0.764
AGAP006108 Anopheles gambiae AGAP006108 I 0.764
Bm1_57515 Brugia malayi Bm1_57515 I 0.764
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.764
CBN16711 Caenorhabditis brenneri CBN16711 I 0.750
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.750
CRE01789 Caenorhabditis remanei CRE01789 I 0.750
cey-1 Caenorhabditis elegans F33A8.3 I 0.750
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.750
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.740
YBX2 Echinops telfairi ENSETEG00000014271 I 0.740
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.740
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.736
CBG02981 Caenorhabditis briggsae CBG02981 I 0.736
YBX1 Echinops telfairi ENSETEG00000014789 I 0.736
133388 Helobdella robusta 133388 I 0.736
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.732
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.722
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.722
CJA05984 Caenorhabditis japonica CJA05984 I 0.722
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.722
ENSCJAG00000009207 Callithrix jacchus ENSCJAG00000009207 I 0.722
146547 Helobdella robusta 146547 I 0.722
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.718
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.716
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.712
Minc12652 Meloidogyne incognita Minc12652 I 0.708
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.708
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.708
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.708
YBX2 Oryzias latipes ENSORLG00000018683 I 0.708
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.708
CSDA Felis catus ENSFCAG00000018959 I 0.708
YBX1 Procavia capensis ENSPCAG00000008397 I 0.708
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.708