ENSMODG00000022963 (Monodelphis domestica)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSMODG00000022963 T16922_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.917
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.917
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.915
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.915
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.915
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.887
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000021484 CSD 56 126

Links

Other CSD family RBPs
Other Monodelphis domestica RBPs

198 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.944
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.944
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.944
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.944
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.944
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.944
ybx1 Danio rerio ENSDARG00000004757 I 0.944
CSDA Cavia porcellus ENSCPOG00000011329 I 0.944
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.944
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.944
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.944
Q00436 Xenopus laevis Q00436 I 0.944
AAA49715 Xenopus laevis AAA49715 I 0.944
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.944
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.944
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.944
AAH42217 Xenopus laevis AAH42217 I 0.944
AAI06324 Xenopus laevis AAI06324 I 0.944
P21573 Xenopus laevis P21573 I 0.944
CAA42778 Xenopus laevis CAA42778 I 0.944
AAI30161 Xenopus laevis AAI30161 I 0.944
Csda Dipodomys ordii ENSDORG00000009103 I 0.944
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.944
YBX1 Microcebus murinus ENSMICG00000014984 I 0.944
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.944
CSDA Loxodonta africana ENSLAFG00000017247 I 0.944
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.944
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.944
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.944
CSDA Monodelphis domestica ENSMODG00000018248 I 0.944
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.944
CSDA Macaca mulatta ENSMMUG00000022469 I 0.944
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.944
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.944
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.944
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.944
LOC100067336 Equus caballus ENSECAG00000023592 I 0.944
LOC100065107 Equus caballus ENSECAG00000013777 I 0.944
CSDA Echinops telfairi ENSETEG00000002557 I 0.944
CSDA Homo sapiens ENSG00000060138 I 0.944
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.944
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.944
YB-1 Homo sapiens ENSG00000065978 D 0.944
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.944
AAH41191 Xenopus laevis AAH41191 I 0.944
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.944
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.944
CSDA Pan troglodytes ENSPTRG00000004681 I 0.944
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.944
Csda Mus musculus ENSMUSG00000030189 I 0.944
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.944
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.944
CSDA Sus scrofa ENSSSCG00000000633 I 0.944
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.944
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.944
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.944
Csda Rattus norvegicus ENSRNOG00000005480 I 0.944
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.944
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.944
Ybx1 Mus musculus ENSMUSG00000028639 I 0.944
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.944
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.944
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.944
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.930
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.930
csda Xenopus tropicalis ENSXETG00000016239 I 0.930
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.930
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.930
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.915
AAA49716 Xenopus laevis AAA49716 I 0.915
AAI55915 Xenopus laevis AAI55915 I 0.915
P21574 Xenopus laevis P21574 I 0.915
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.915
ybx2-a Xenopus laevis AAI69706 D 0.915
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.915
AAI69704 Xenopus laevis AAI69704 I 0.915
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.915
AAA49924 Xenopus laevis AAA49924 I 0.901
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.901
YBX2 Canis familiaris ENSCAFG00000016128 I 0.901
Ybx2 Mus musculus ENSMUSG00000018554 I 0.901
P45441 Xenopus laevis P45441 I 0.901
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.901
YBX2 Sus scrofa ENSSSCG00000017938 I 0.901
YBX2 Procavia capensis ENSPCAG00000008019 I 0.901
AAI55914 Xenopus laevis AAI55914 I 0.901
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.901
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.901
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.901
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.901
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.901
LOC100072964 Equus caballus ENSECAG00000009996 I 0.901
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.901
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.901
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.889
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.889
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.887
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.887
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.887
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.887
YBX2 Sorex araneus ENSSARG00000000488 I 0.887
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.887
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.887
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.887
YBX2 Homo sapiens ENSG00000006047 D 0.887
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.873
CSDA Procavia capensis ENSPCAG00000001397 I 0.873
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.836
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.836
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.833
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.833
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.833
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.833
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.833
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.833
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.833
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.833
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.833
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.833
PHUM156710 Pediculus humanus PHUM156710 I 0.833
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.822
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.822
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.822
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.819
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.819
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.819
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.819
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.819
CSDA Microcebus murinus ENSMICG00000004602 I 0.817
CSDA Vicugna pacos ENSVPAG00000000876 I 0.817
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.817
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.808
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.806
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.806
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.806
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.797
GH16919 Drosophila grimshawi FBgn0124390 I 0.792
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.792
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.792
GF10852 Drosophila ananassae FBgn0087892 I 0.792
GI13673 Drosophila mojavensis FBgn0136428 I 0.792
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.792
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.792
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.792
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.792
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.792
GJ14010 Drosophila virilis FBgn0201228 I 0.792
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.792
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.792
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.792
GL15684 Drosophila persimilis FBgn0153288 I 0.792
GK16710 Drosophila willistoni FBgn0218712 I 0.792
PHUM156720 Pediculus humanus PHUM156720 I 0.792
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.789
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.789
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.778
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.778
yps Drosophila melanogaster FBgn0022959 I 0.778
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.778
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.778
GD12750 Drosophila simulans FBgn0184477 I 0.778
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.778
GE20150 Drosophila yakuba FBgn0237472 I 0.778
GM24682 Drosophila sechellia FBgn0179545 I 0.778
AAEL001375 Aedes aegypti AAEL001375 I 0.764
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.764
AGAP006108 Anopheles gambiae AGAP006108 I 0.764
Bm1_57515 Brugia malayi Bm1_57515 I 0.764
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.764
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.764
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.764
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.764
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.764
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.764
ISCW005281 Ixodes scapularis ISCW005281 I 0.764
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.750
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.750
133388 Helobdella robusta 133388 I 0.750
CRE01789 Caenorhabditis remanei CRE01789 I 0.750
cey-1 Caenorhabditis elegans F33A8.3 I 0.750
CBN16711 Caenorhabditis brenneri CBN16711 I 0.750
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.750
146547 Helobdella robusta 146547 I 0.736
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.736
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.736
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.736
YBX1 Sorex araneus ENSSARG00000012628 I 0.736
CBG02981 Caenorhabditis briggsae CBG02981 I 0.736
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.736
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.726
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.726
CJA05984 Caenorhabditis japonica CJA05984 I 0.722
Minc12652 Meloidogyne incognita Minc12652 I 0.722
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.722
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.722
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.722
YBX1 Echinops telfairi ENSETEG00000014789 I 0.708
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.708