YBX2 (Oryzias latipes)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSORLG00000018683 T16968_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.736
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.736
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.736
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.732
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.732
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000023344 CSD 2 72

Links

Other CSD family RBPs
Other Oryzias latipes RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.764
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.764
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.764
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.750
P21574 Xenopus laevis P21574 I 0.736
AAI69704 Xenopus laevis AAI69704 I 0.736
AAA49716 Xenopus laevis AAA49716 I 0.736
ybx2-a Xenopus laevis AAI69706 D 0.736
AAI55915 Xenopus laevis AAI55915 I 0.736
YBX2 Homo sapiens ENSG00000006047 D 0.722
csda Xenopus tropicalis ENSXETG00000016239 I 0.722
P45441 Xenopus laevis P45441 I 0.722
AAA49924 Xenopus laevis AAA49924 I 0.722
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.722
YBX2 Procavia capensis ENSPCAG00000008019 I 0.722
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.722
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.722
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.722
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.722
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.722
LOC100072964 Equus caballus ENSECAG00000009996 I 0.722
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.722
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.722
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.722
Ybx2 Mus musculus ENSMUSG00000018554 I 0.722
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.722
YBX2 Sus scrofa ENSSSCG00000017938 I 0.722
YBX2 Canis familiaris ENSCAFG00000016128 I 0.722
AAI55914 Xenopus laevis AAI55914 I 0.722
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.722
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.708
CSDA Echinops telfairi ENSETEG00000002557 I 0.708
LOC100065107 Equus caballus ENSECAG00000013777 I 0.708
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.708
LOC100067336 Equus caballus ENSECAG00000023592 I 0.708
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.708
CSDA Homo sapiens ENSG00000060138 I 0.708
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.708
YB-1 Homo sapiens ENSG00000065978 D 0.708
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.708
CSDA Monodelphis domestica ENSMODG00000018248 I 0.708
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.708
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.708
Ybx1 Mus musculus ENSMUSG00000028639 I 0.708
Csda Mus musculus ENSMUSG00000030189 I 0.708
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.708
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.708
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.708
CSDA Macaca mulatta ENSMMUG00000022469 I 0.708
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.708
Csda Dipodomys ordii ENSDORG00000009103 I 0.708
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.708
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.708
CSDA Loxodonta africana ENSLAFG00000017247 I 0.708
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.708
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.708
YBX1 Microcebus murinus ENSMICG00000014984 I 0.708
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.708
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.708
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.708
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.708
CSDA Sus scrofa ENSSSCG00000000633 I 0.708
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.708
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.708
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.708
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.708
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.708
YBX2 Sorex araneus ENSSARG00000000488 I 0.708
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.708
CSDA Pan troglodytes ENSPTRG00000004681 I 0.708
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.708
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.708
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.708
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.708
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.708
Csda Rattus norvegicus ENSRNOG00000005480 I 0.708
ybx1 Danio rerio ENSDARG00000004757 I 0.708
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.708
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.708
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.708
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.708
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.708
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.708
CSDA Cavia porcellus ENSCPOG00000011329 I 0.708
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.708
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.708
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.708
Q00436 Xenopus laevis Q00436 I 0.708
AAI06324 Xenopus laevis AAI06324 I 0.708
AAH42217 Xenopus laevis AAH42217 I 0.708
AAH41191 Xenopus laevis AAH41191 I 0.708
AAA49715 Xenopus laevis AAA49715 I 0.708
AAI30161 Xenopus laevis AAI30161 I 0.708
P21573 Xenopus laevis P21573 I 0.708
CAA42778 Xenopus laevis CAA42778 I 0.708
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.704
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.704