ENSTNIG00000010139 (Tetraodon nigroviridis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSTNIG00000010139 T17041_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.863
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.863
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.863
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.861
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.861
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.849
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000013037 CSD 29 100

Links

Other CSD family RBPs
Other Tetraodon nigroviridis RBPs

184 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.958
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.958
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.944
YBX2 Canis familiaris ENSCAFG00000016128 I 0.863
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.863
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.863
LOC100072964 Equus caballus ENSECAG00000009996 I 0.863
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.863
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.863
AAI69704 Xenopus laevis AAI69704 I 0.863
Ybx2 Mus musculus ENSMUSG00000018554 I 0.863
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.863
YBX2 Sus scrofa ENSSSCG00000017938 I 0.863
ybx2-a Xenopus laevis AAI69706 D 0.863
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.863
AAI55915 Xenopus laevis AAI55915 I 0.863
AAA49716 Xenopus laevis AAA49716 I 0.863
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.863
YBX2 Procavia capensis ENSPCAG00000008019 I 0.863
P21574 Xenopus laevis P21574 I 0.863
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.863
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.861
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.849
YBX2 Homo sapiens ENSG00000006047 D 0.849
P45441 Xenopus laevis P45441 I 0.849
AAA49924 Xenopus laevis AAA49924 I 0.849
YBX2 Sorex araneus ENSSARG00000000488 I 0.849
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.849
AAI55914 Xenopus laevis AAI55914 I 0.849
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.849
CAA42778 Xenopus laevis CAA42778 I 0.836
P21573 Xenopus laevis P21573 I 0.836
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.836
Q00436 Xenopus laevis Q00436 I 0.836
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.836
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.836
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.836
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.836
Csda Dipodomys ordii ENSDORG00000009103 I 0.836
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.836
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.836
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.836
ybx1 Danio rerio ENSDARG00000004757 I 0.836
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.836
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.836
CSDA Cavia porcellus ENSCPOG00000011329 I 0.836
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.836
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.836
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.836
CSDA Echinops telfairi ENSETEG00000002557 I 0.836
CSDA Homo sapiens ENSG00000060138 I 0.836
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.836
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.836
LOC100065107 Equus caballus ENSECAG00000013777 I 0.836
LOC100067336 Equus caballus ENSECAG00000023592 I 0.836
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.836
YB-1 Homo sapiens ENSG00000065978 D 0.836
AAA49715 Xenopus laevis AAA49715 I 0.836
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.836
Csda Rattus norvegicus ENSRNOG00000005480 I 0.836
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.836
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.836
CSDA Pan troglodytes ENSPTRG00000004681 I 0.836
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.836
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.836
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.836
CSDA Sus scrofa ENSSSCG00000000633 I 0.836
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.836
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.836
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.836
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.836
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.836
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.836
csda Xenopus tropicalis ENSXETG00000016239 I 0.836
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.836
AAI30161 Xenopus laevis AAI30161 I 0.836
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.836
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.836
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.836
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.836
YBX1 Microcebus murinus ENSMICG00000014984 I 0.836
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.836
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.836
AAH41191 Xenopus laevis AAH41191 I 0.836
CSDA Macaca mulatta ENSMMUG00000022469 I 0.836
Ybx1 Mus musculus ENSMUSG00000028639 I 0.836
Csda Mus musculus ENSMUSG00000030189 I 0.836
AAI06324 Xenopus laevis AAI06324 I 0.836
CSDA Monodelphis domestica ENSMODG00000018248 I 0.836
AAH42217 Xenopus laevis AAH42217 I 0.836
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.836
CSDA Loxodonta africana ENSLAFG00000017247 I 0.836
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.822
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.822
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.822
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.822
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.822
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.822
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.822
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.822
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.822
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.808
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.808
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.806
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.806
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.806
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.795
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.792
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.792
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.792
GJ14010 Drosophila virilis FBgn0201228 I 0.792
GH16919 Drosophila grimshawi FBgn0124390 I 0.792
GI13673 Drosophila mojavensis FBgn0136428 I 0.792
CSDA Procavia capensis ENSPCAG00000001397 I 0.781
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.781
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.781
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.781
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.781
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.778
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.778
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.778
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.778
GL15684 Drosophila persimilis FBgn0153288 I 0.778
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.778
GK16710 Drosophila willistoni FBgn0218712 I 0.778
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.778
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.778
PHUM156710 Pediculus humanus PHUM156710 I 0.778
GF10852 Drosophila ananassae FBgn0087892 I 0.778
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.778
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.778
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.778
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.778
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.778
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.767
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.764
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.764
ISCW005281 Ixodes scapularis ISCW005281 I 0.764
PHUM156720 Pediculus humanus PHUM156720 I 0.764
YBX2 Echinops telfairi ENSETEG00000014271 I 0.764
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.764
GM24682 Drosophila sechellia FBgn0179545 I 0.764
GD12750 Drosophila simulans FBgn0184477 I 0.764
GE20150 Drosophila yakuba FBgn0237472 I 0.764
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.764
yps Drosophila melanogaster FBgn0022959 I 0.764
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.764
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.757
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.753
YBX2 Oryzias latipes ENSORLG00000018683 I 0.750
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.750
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.750
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.750
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.740
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.736
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.736
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.736
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.736
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.736
Bm1_57515 Brugia malayi Bm1_57515 I 0.736
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.736
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.736
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.736
AGAP006108 Anopheles gambiae AGAP006108 I 0.736
AAEL001375 Aedes aegypti AAEL001375 I 0.736
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.736
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.736
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.722
133388 Helobdella robusta 133388 I 0.722
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.722
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.722
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.722
CSDA Microcebus murinus ENSMICG00000004602 I 0.712
CSDA Vicugna pacos ENSVPAG00000000876 I 0.712
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.708
cey-1 Caenorhabditis elegans F33A8.3 I 0.708
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.708
CRE01789 Caenorhabditis remanei CRE01789 I 0.708
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.708
CBN16711 Caenorhabditis brenneri CBN16711 I 0.708
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.708
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.708
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.708
146547 Helobdella robusta 146547 I 0.708