CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSOCUG00000025394
(
Oryctolagus cuniculus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSOCUG00000025394
T19210_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.704
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000023058
KH
18
78
TFQLHINGKEVGSIIKKKKGASVKICKVSGAYINISEGISPKRITTLARPTNAIFQAFAMI
ENSOCUP00000023058
KH
102
163
TLRLVAPASQHGALIRKGGYKSKEIRETGAQVQMAGHMLPNLTERAITIAGILQSIEFVKQI
ENSOCUP00000023058
KH
230
288
THELTVPNYCIGCIISGQGTKISEICQMSGTQIKTGNPEGFADRQVTINGSAASISLAQ
Links
Other
KH
family RBPs
Other
Oryctolagus cuniculus
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PCBP2
Gorilla gorilla
ENSGGOG00000012613
I
0.704
PCBP2
Homo sapiens
ENSG00000197111
D
0.704
PCBP2
Equus caballus
ENSECAG00000022389
I
0.704
PCBP2
Dasypus novemcinctus
ENSDNOG00000008688
I
0.704
ENSLAFG00000013187
Loxodonta africana
ENSLAFG00000013187
I
0.704
PCBP2
Microcebus murinus
ENSMICG00000011651
I
0.704
ENSOCUG00000022490
Oryctolagus cuniculus
ENSOCUG00000022490
I
0.704
Pcbp2
Mus musculus
ENSMUSG00000056851
I
0.704
ENSMODG00000000280
Monodelphis domestica
ENSMODG00000000280
I
0.704
PCBP2
Macaca mulatta
ENSMMUG00000006608
I
0.704
ENSCPOG00000000967
Cavia porcellus
ENSCPOG00000000967
I
0.704
LOC100409398
Callithrix jacchus
ENSCJAG00000007694
I
0.704
PCBP2
Pteropus vampyrus
ENSPVAG00000012284
I
0.704
PCBP2
Pan troglodytes
ENSPTRG00000005018
I
0.704
ENSPPYG00000004581
Pongo pygmaeus
ENSPPYG00000004581
I
0.704
PCBP2
Procavia capensis
ENSPCAG00000005154
I
0.704
PCBP2
Sus scrofa
ENSSSCG00000000274
I
0.704
PCBP2
Tursiops truncatus
ENSTTRG00000017174
I
0.704
PCBP2
Canis familiaris
ENSCAFG00000006821
I
0.704
Q3SYT9_BOVIN
Bos taurus
ENSBTAG00000020757
I
0.704
ENSACAG00000000783
Anolis carolinensis
ENSACAG00000000783
I
0.704
PCBP2
Ochotona princeps
ENSOPRG00000004680
I
0.704