LOC100409398 (Callithrix jacchus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSCJAG00000007694 T18538_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.931
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.888
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.867
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.867
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.824
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000014243 KH 15 75
ENSCJAP00000014243 KH 99 162
ENSCJAP00000014243 KH 286 348

Links

Other KH family RBPs
Other Callithrix jacchus RBPs

101 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.931
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.931
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.931
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.931
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.931
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.931
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.931
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.931
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.931
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.931
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.931
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.931
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.931
PCBP2 Homo sapiens ENSG00000197111 D 0.931
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.931
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.931
PCBP2 Equus caballus ENSECAG00000022389 I 0.931
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.931
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.931
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.931
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.931
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.926
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.920
CAD29864 Xenopus laevis CAD29864 I 0.915
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.915
CAB50743 Xenopus laevis CAB50743 I 0.915
AAH84195 Xenopus laevis AAH84195 I 0.915
AAH41241 Xenopus laevis AAH41241 I 0.915
pcbp2 Danio rerio ENSDARG00000013184 D 0.888
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.888
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.888
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.888
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.883
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.883
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.878
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.878
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.872
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.867
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.867
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.867
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.867
LOC100050579 Equus caballus ENSECAG00000002544 I 0.867
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.867
PCBP1 Homo sapiens ENSG00000169564 D 0.867
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.867
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.867
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.867
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.867
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.867
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.862
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.862
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.851
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.846
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.846
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.841
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.836
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.835
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.828
PCBP3 Gallus gallus ENSGALG00000013155 I 0.824
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.824
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.824
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.824
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.824
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.824
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.824
PCBP3 Homo sapiens ENSG00000183570 I 0.824
LOC100050101 Equus caballus ENSECAG00000012413 I 0.824
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.824
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.824
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.824
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.824
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.824
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.824
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.819
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.814
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.814
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.814
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.814
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.814
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.814
PCBP2 Myotis lucifugus ENSMLUG00000009971 I 0.787
PCBP3 Gallus gallus ENSGALG00000004394 I 0.787
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.783
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.782
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.782
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.775
D4A8D6_RAT Rattus norvegicus ENSRNOG00000006713 I 0.755
PCBP2 Tupaia belangeri ENSTBEG00000015592 I 0.750
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.750
PCBP1 Taeniopygia guttata ENSTGUG00000016232 I 0.745
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.739
pcbp3 Danio rerio ENSDARG00000054378 I 0.734
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.734
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.734
ENSLAFG00000025534 Loxodonta africana ENSLAFG00000025534 I 0.730
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.729
ENSOCUG00000021452 Oryctolagus cuniculus ENSOCUG00000021452 I 0.728
ENSMODG00000020653 Monodelphis domestica ENSMODG00000020653 I 0.720
PCBP1 Otolemur garnettii ENSOGAG00000008557 I 0.709
ENSOCUG00000025394 Oryctolagus cuniculus ENSOCUG00000025394 I 0.704
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.704