B9HUM6_POPTR (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0010s23710 T20215_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s23710.1 KH 36 101
POPTR_0010s23710.1 KH 122 187
POPTR_0010s23710.1 KH 256 321
POPTR_0010s23710.2 KH 36 101
POPTR_0010s23710.2 KH 122 187
POPTR_0010s23710.2 KH 235 300

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PG03_POPTR Populus trichocarpa POPTR_0008s03070 N 0.914
28872.m000243 Ricinus communis 28872.m000243 N 0.884
GSVIVG00016165001 Vitis vinifera GSVIVG00016165001 N 0.828
Cucsa.308810 Cucumis sativus Cucsa.308810 N 0.803
XM_002873104.1 Arabidopsis lyrata fgenesh2_kg.6__359__AT5G04430.2 N 0.788
Glyma20g33330.1 Glycine max Glyma20g33330.1 N 0.788
Glyma10g34220.1 Glycine max Glyma10g34220.1 N 0.788
BTR1 Arabidopsis thaliana AT5G04430-TAIR-G N 0.788
mgf012132m Mimulus guttatus mgf012132m N 0.773
SB04G037690 Sorghum bicolor Sb04g037690 N 0.768
ppa009568m Prunus persica ppa009568m N 0.763
ppa009068m Prunus persica ppa009068m N 0.763
GRMZM2G008410 Zea mays GRMZM2G008410 N 0.758
LOC_Os02g57640 Oryza sativa LOC_Os02g57640 N 0.753
PDK_20s1450001g001 Phoenix dactylifera PDK_20s1450001g001 N 0.742
BRADI3G55870 Brachypodium distachyon BRADI3G55870 N 0.737
MDP0000142937 Malus x domestica MDP0000142937 N 0.707