CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
mgf012132m
(
Mimulus guttatus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
mgf012132m
T21300_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf012132m
KH
32
97
HLRFLLSNAEAGSVIGKGGATINDIQSQSGARVQLSRNFEYFPGTSDRIIMVSGTIDDVLKAVNLI
mgf012132m
KH
118
183
KIRLVVPNSSCGGIIGKGGSIIRSLMEESSASIKISSQDTYYPGLHDRLVTVSGSLGEQMRAVELI
mgf012132m
KH
238
303
SITIGIADEHIGIVVGRGGRNIMELSQLSGARIKISERGDFMSGTSDRKVTITGSQRSIHMAESMI
Links
Other
KH
family RBPs
Other
Mimulus guttatus
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9HUM6_POPTR
Populus trichocarpa
POPTR_0010s23710
N
0.773
GSVIVG00016165001
Vitis vinifera
GSVIVG00016165001
N
0.763
28872.m000243
Ricinus communis
28872.m000243
N
0.758
Glyma10g34220.1
Glycine max
Glyma10g34220.1
N
0.737
SB04G037690
Sorghum bicolor
Sb04g037690
N
0.732
A9PG03_POPTR
Populus trichocarpa
POPTR_0008s03070
N
0.732
Glyma20g33330.1
Glycine max
Glyma20g33330.1
N
0.727
Cucsa.308810
Cucumis sativus
Cucsa.308810
N
0.727
GRMZM2G008410
Zea mays
GRMZM2G008410
N
0.722
LOC_Os02g57640
Oryza sativa
LOC_Os02g57640
N
0.722
BRADI3G55870
Brachypodium distachyon
BRADI3G55870
N
0.702