Cucsa.308810 (Cucumis sativus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Cucsa.308810 T20716_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.308810.1 KH 36 101
Cucsa.308810.1 KH 122 187
Cucsa.308810.1 KH 247 312
Cucsa.308810.2 KH 36 101
Cucsa.308810.2 KH 122 187
Cucsa.308810.2 KH 247 312
Cucsa.308810.3 KH 36 101
Cucsa.308810.3 KH 122 187
Cucsa.308810.3 KH 237 302

Links

Other KH family RBPs
Other Cucumis sativus RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00016165001 Vitis vinifera GSVIVG00016165001 N 0.894
Glyma10g34220.1 Glycine max Glyma10g34220.1 N 0.848
Glyma20g33330.1 Glycine max Glyma20g33330.1 N 0.843
28872.m000243 Ricinus communis 28872.m000243 N 0.808
B9HUM6_POPTR Populus trichocarpa POPTR_0010s23710 N 0.803
PDK_20s1450001g001 Phoenix dactylifera PDK_20s1450001g001 N 0.788
SB04G037690 Sorghum bicolor Sb04g037690 N 0.783
ppa009568m Prunus persica ppa009568m N 0.783
ppa009068m Prunus persica ppa009068m N 0.783
BTR1 Arabidopsis thaliana AT5G04430-TAIR-G N 0.773
XM_002873104.1 Arabidopsis lyrata fgenesh2_kg.6__359__AT5G04430.2 N 0.773
GRMZM2G008410 Zea mays GRMZM2G008410 N 0.773
A9PG03_POPTR Populus trichocarpa POPTR_0008s03070 N 0.768
LOC_Os02g57640 Oryza sativa LOC_Os02g57640 N 0.768
BRADI3G55870 Brachypodium distachyon BRADI3G55870 N 0.768
MDP0000142937 Malus x domestica MDP0000142937 N 0.742
mgf012132m Mimulus guttatus mgf012132m N 0.727