CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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pes-4
(
Caenorhabditis elegans
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
Y119D3B.17
T20315_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Y119D3B.17
KH
73
133
TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCPERIVTITGTLGVIGKAFNMV
Y119D3B.17
KH
154
217
TMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINLATSLK
Links
Other
KH
family RBPs
Other
Caenorhabditis elegans
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CRE26806
Caenorhabditis remanei
CRE26806
N
0.960
CBN14493
Caenorhabditis brenneri
CBN14493
N
0.960
CBG15694
Caenorhabditis briggsae
CBG15694
N
0.960
PHUM522820
Pediculus humanus
PHUM522820
N
0.752
Pcbp3
Mus musculus
ENSMUSG00000001120
D
0.720
PCBP3
Ornithorhynchus anatinus
ENSOANG00000006265
N
0.720
Pcbp3
Dipodomys ordii
ENSDORG00000003640
N
0.720
Pcbp3
Rattus norvegicus
ENSRNOG00000001245
I
0.720
PCBP3
Canis familiaris
ENSCAFG00000011907
N
0.720
AAH74333
Xenopus laevis
AAH74333
N
0.720
AAI33216
Xenopus laevis
AAI33216
N
0.712
WUBG_05097
Wuchereria bancrofti
WUBG_05097
N
0.712
zgc:110045
Danio rerio
ENSDARG00000057141
N
0.712
pcbp3
Danio rerio
ENSDARG00000054378
I
0.704