CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAI33216
(
Xenopus laevis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
AAI33216
T22137_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI33216
KH
15
75
TIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI
AAI33216
KH
99
162
TLRLVVPASQCGSLIGKGGSKIKEIRESTGSQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI
Links
Other
KH
family RBPs
Other
Xenopus laevis
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Pcbp3
Mus musculus
ENSMUSG00000001120
D
0.992
Pcbp3
Rattus norvegicus
ENSRNOG00000001245
I
0.992
AAH74333
Xenopus laevis
AAH74333
N
0.992
Pcbp3
Dipodomys ordii
ENSDORG00000003640
N
0.992
PCBP3
Ornithorhynchus anatinus
ENSOANG00000006265
N
0.992
PCBP3
Canis familiaris
ENSCAFG00000011907
N
0.992
pcbp3
Danio rerio
ENSDARG00000054378
I
0.976
PCBP3
Takifugu rubripes
ENSTRUG00000013604
I
0.968
ENSPPYG00000011525
Pongo pygmaeus
ENSPPYG00000011525
N
0.920
LOC426023
Gallus gallus
ENSGALG00000013313
N
0.896
PCBP2
Vicugna pacos
ENSVPAG00000000406
N
0.896
PCBP2
Erinaceus europaeus
ENSEEUG00000001077
N
0.896
zgc:110045
Danio rerio
ENSDARG00000057141
N
0.888
ENSTRUG00000017789
Takifugu rubripes
ENSTRUG00000017789
I
0.880
pcbp1
Xenopus tropicalis
ENSXETG00000011483
N
0.872
PCBP3
Tarsius syrichta
ENSTSYG00000005254
N
0.856
PCBP4
Danio rerio
ENSDARG00000024276
N
0.840
PCBP3
Spermophilus tridecemlineatus
ENSSTOG00000007178
N
0.840
ENSMGAG00000003191
Meleagris gallopavo
ENSMGAG00000003191
N
0.832
PCBP4
Takifugu rubripes
ENSTRUG00000007426
I
0.816
ENSTNIG00000003546
Tetraodon nigroviridis
ENSTNIG00000003546
N
0.816
PHUM522820
Pediculus humanus
PHUM522820
N
0.800
PCBP4
Homo sapiens
ENSG00000090097
I
0.800
CRE26806
Caenorhabditis remanei
CRE26806
N
0.728
CBG15694
Caenorhabditis briggsae
CBG15694
N
0.728
CBN14493
Caenorhabditis brenneri
CBN14493
N
0.728
PCBP3
Sorex araneus
ENSSARG00000007629
N
0.727
pes-4
Caenorhabditis elegans
Y119D3B.17
N
0.712