cassava18339.valid.m1 (Manihot esculenta)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 cassava18339.valid.m1 T20658_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava18339.valid.m1 KH 48 106
cassava18339.valid.m1 KH 142 209
cassava18339.valid.m1 KH 320 382

Links

Other KH family RBPs
Other Manihot esculenta RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28226.m000850 Ricinus communis 28226.m000850 N 0.879
B9N6B7_POPTR Populus trichocarpa POPTR_0006s29200 N 0.853
Cucsa.089000 Cucumis sativus Cucsa.089000 N 0.789
ppa004405m Prunus persica ppa004405m N 0.780
Glyma09g06750.1 Glycine max Glyma09g06750.1 N 0.775
chr4.CM0244.150.nd Lotus japonicus chr4.CM0244.150.nd N 0.768
30198.m000862 Ricinus communis 30198.m000862 N 0.764
Glyma17g06640.1 Glycine max Glyma17g06640.1 N 0.753
Glyma13g00510.1 Glycine max Glyma13g00510.1 N 0.749
Medtr8g129730 Medicago truncatula Medtr8g129730 N 0.743
MDP0000135143 Malus x domestica MDP0000135143 N 0.736
mgf013216m Mimulus guttatus mgf013216m N 0.733
Medtr2g042750 Medicago truncatula Medtr2g042750 N 0.733
PEP Arabidopsis thaliana AT4G26000-TAIR-G N 0.732
XM_002869589.1 Arabidopsis lyrata fgenesh2_kg.7__1649__AT4G26000.1 N 0.726