CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_Genewise1Plus.C_70089
(
Capitella teleta
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
estExt_Genewise1Plus.C_70089
T20975_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_70089
KH
105
157
VKRRQRLIGPNGSTLKAIELLTSCYVTVQGSTVAAIGKYSGLKFVRSIVTDCM
Links
Other
KH
family RBPs
Other
Capitella teleta
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOAG_07118
Loa loa
LOAG_07118
N
0.745
estExt_Genewise1Plus.C_20041
Sporobolomyces roseus
estExt_Genewise1Plus.C_20041
N
0.719
gw1.1.562.1
Micromonas pusilla
gw1.1.562.1
N
0.717
Chro.30334
Cryptosporidium hominis
Chro.30334
N
0.717
cgd3_2950
Cryptosporidium parvum
cgd3_2950
N
0.717
85673
Helobdella robusta
85673
N
0.707
e_gw1.1.604.1
Mucor circinelloides
e_gw1.1.604.1
N
0.704
Hrb2
Rattus norvegicus
ENSRNOG00000004035
N
0.704
estExt_fgenesh2_kg.C_20554
Agaricus bisporus
estExt_fgenesh2_kg.C_20554
N
0.704
KRR1
Loxodonta africana
ENSLAFG00000015986
N
0.704
Krr1
Mus musculus
ENSMUSG00000063334
N
0.704