CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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85673
(
Helobdella robusta
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
85673
T20616_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
85673
KH
128
185
FAKRRQRLVGPNGSTLKAIELLTECYVMVQGSTVAAIGPMKGLKEVRKIVVETMKNVH
Links
Other
KH
family RBPs
Other
Helobdella robusta
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF14827
Drosophila ananassae
FBgn0091854
N
0.776
estExt_Genewise1Plus.C_20041
Sporobolomyces roseus
estExt_Genewise1Plus.C_20041
N
0.759
KRR1
Oryzias latipes
ENSORLG00000019616
N
0.741
AAH41273
Xenopus laevis
AAH41273
N
0.724
nasonia_NCBI_hmm386444
Nasonia vitripennis
nasonia_NCBI_hmm386444
N
0.707
AAH72210
Xenopus laevis
AAH72210
N
0.707
estExt_Genewise1Plus.C_70089
Capitella teleta
estExt_Genewise1Plus.C_70089
N
0.707
DGIL_AUG5s1009g5t1
Acyrtosiphon pisum
DGIL_AUG5s1009g5t1
N
0.707