gw.576.16.1 (Branchiostoma floridae)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 gw.576.16.1 T21271_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHDRBS2
M176_0.6 		Homo sapiens RAUAAAM RNAcompete
Ray et al.(2013)
RNCMPT00185 		0.741
KHDRBS3
M033_0.6 		Homo sapiens AUAAAV RNAcompete
Ray et al.(2013)
RNCMPT00034 		0.711
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw.576.16.1 KH 60 133

Links

Other KH family RBPs
Other Branchiostoma floridae RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh2_pg.scaffold_166000064 Branchiostoma floridae fgenesh2_pg.scaffold_166000064 I 0.986
AGAP003356 Anopheles gambiae AGAP003356 N 0.747
KHDRBS2 Gorilla gorilla ENSGGOG00000025068 I 0.741
KHDRBS2 Loxodonta africana ENSLAFG00000006655 I 0.741
KHDRBS2 Gallus gallus ENSGALG00000016276 I 0.741
KHDRBS2 Taeniopygia guttata ENSTGUG00000012786 I 0.741
KHDRBS2 Oryctolagus cuniculus ENSOCUG00000012344 I 0.741
KHDRBS2 Sus scrofa ENSSSCG00000001490 I 0.741
KHDRBS2 Macaca mulatta ENSMMUG00000003329 I 0.741
KHDRBS2 Pan troglodytes ENSPTRG00000018311 I 0.741
Khdrbs2 Mus musculus ENSMUSG00000026058 I 0.741
KHDRBS2 Monodelphis domestica ENSMODG00000018714 I 0.741
Khdrbs2 Rattus norvegicus ENSRNOG00000012284 I 0.741
KHDRBS2 Tarsius syrichta ENSTSYG00000007203 I 0.741
KHDRBS2 Meleagris gallopavo ENSMGAG00000013877 I 0.741
KHDRBS2 Homo sapiens ENSG00000112232 D 0.741
KHDRBS2 Erinaceus europaeus ENSEEUG00000003986 I 0.741
KHDRBS2 Cavia porcellus ENSCPOG00000025621 I 0.741
KHDRBS2 Tursiops truncatus ENSTTRG00000005591 I 0.741
LOC100395662 Callithrix jacchus ENSCJAG00000001766 I 0.741
KHDRBS2 Canis familiaris ENSCAFG00000002470 I 0.741
KHDRBS2 Bos taurus ENSBTAG00000043990 I 0.741
KHDRBS2 Anolis carolinensis ENSACAG00000006691 I 0.741
KHDRBS2 Dasypus novemcinctus ENSDNOG00000014028 I 0.741
LOC100056966 Equus caballus ENSECAG00000021541 I 0.741
Khdrbs2 Dipodomys ordii ENSDORG00000005701 I 0.728
KHDRBS2 Vicugna pacos ENSVPAG00000001469 I 0.728
khdrbs3 Xenopus tropicalis ENSXETG00000009227 I 0.720
KHDRBS3 Otolemur garnettii ENSOGAG00000005150 I 0.711
KHDRBS3 Ochotona princeps ENSOPRG00000000404 I 0.711
KHDRBS3 Tursiops truncatus ENSTTRG00000001270 I 0.711
KHDRBS3 Taeniopygia guttata ENSTGUG00000012611 I 0.711
KHDRBS3 Tupaia belangeri ENSTBEG00000004773 I 0.711
KHDRBS3 Spermophilus tridecemlineatus ENSSTOG00000008710 I 0.711
KHDRBS3 Sus scrofa ENSSSCG00000005941 I 0.711
Q6J4Q9_PANTR Pan troglodytes ENSPTRG00000020608 I 0.711
KHDRBS3 Meleagris gallopavo ENSMGAG00000012888 I 0.711
KHDRBS3 Cavia porcellus ENSCPOG00000000342 I 0.711
KHDRBS3 Echinops telfairi ENSETEG00000004701 I 0.711
KHDRBS3 Homo sapiens ENSG00000131773 D 0.711
LOC100399263 Callithrix jacchus ENSCJAG00000004331 I 0.711
KHDRBS3 Canis familiaris ENSCAFG00000001166 I 0.711
KHDRBS3 Anolis carolinensis ENSACAG00000012042 I 0.711
A4FV24_BOVIN Bos taurus ENSBTAG00000002181 I 0.711
KHDRBS3 Oryctolagus cuniculus ENSOCUG00000000743 I 0.711
KHDRBS3 Gallus gallus ENSGALG00000016203 I 0.711
KHDRBS3 Monodelphis domestica ENSMODG00000000975 I 0.711
Khdrbs3 Mus musculus ENSMUSG00000022332 I 0.711
KHDRBS3 Ornithorhynchus anatinus ENSOANG00000014074 I 0.711
Q6J4Q6_MACMU Macaca mulatta ENSMMUG00000022248 I 0.711
Ame_R010681 Ailuropoda melanoleuca Ame_R010681 I 0.711
Q6J4Q8_9PRIM Gorilla gorilla ENSGGOG00000000940 I 0.711
KHDRBS3 Loxodonta africana ENSLAFG00000004849 I 0.711
KHDRBS2 Gasterosteus aculeatus ENSGACG00000006097 I 0.704