CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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khdrbs3
(
Xenopus tropicalis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSXETG00000009227
T19755_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHDRBS3
M033_0.6
Homo sapiens
AUAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00034
0.952
KHDRBS2
M176_0.6
Homo sapiens
RAUAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00185
0.833
KHDRBS1
M160_0.6
Homo sapiens
AUAAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00169
0.729
Khdrbs1
M060_0.6
Mus musculus
UAAAAVV
RNAcompete
Ray et al.(2013)
RNCMPT00062
0.729
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000020272
KH
60
141
KVLIPIKQFPKFNFVGKLLGPRGNSLKRLQEDTLTKMSILGKGSMRDKAKEEELRKSGEAKYYHLNDDLHVLIEVFAPPAEA
Links
Other
KH
family RBPs
Other
Xenopus tropicalis
RBPs
99 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KHDRBS3
Loxodonta africana
ENSLAFG00000004849
I
0.952
KHDRBS3
Monodelphis domestica
ENSMODG00000000975
I
0.952
Q6J4Q8_9PRIM
Gorilla gorilla
ENSGGOG00000000940
I
0.952
KHDRBS3
Homo sapiens
ENSG00000131773
D
0.952
KHDRBS3
Cavia porcellus
ENSCPOG00000000342
I
0.952
KHDRBS3
Echinops telfairi
ENSETEG00000004701
I
0.952
Khdrbs3
Mus musculus
ENSMUSG00000022332
I
0.952
KHDRBS3
Ornithorhynchus anatinus
ENSOANG00000014074
I
0.952
KHDRBS3
Tupaia belangeri
ENSTBEG00000004773
I
0.952
KHDRBS3
Tursiops truncatus
ENSTTRG00000001270
I
0.952
KHDRBS3
Sus scrofa
ENSSSCG00000005941
I
0.952
Q6J4Q9_PANTR
Pan troglodytes
ENSPTRG00000020608
I
0.952
KHDRBS3
Otolemur garnettii
ENSOGAG00000005150
I
0.952
LOC100399263
Callithrix jacchus
ENSCJAG00000004331
I
0.952
Q6J4Q6_MACMU
Macaca mulatta
ENSMMUG00000022248
I
0.952
KHDRBS3
Canis familiaris
ENSCAFG00000001166
I
0.952
A4FV24_BOVIN
Bos taurus
ENSBTAG00000002181
I
0.952
KHDRBS3
Anolis carolinensis
ENSACAG00000012042
I
0.952
Ame_R010681
Ailuropoda melanoleuca
Ame_R010681
I
0.952
LOC100058116
Equus caballus
ENSECAG00000010194
I
0.940
KHDRBS3
Taeniopygia guttata
ENSTGUG00000012611
I
0.940
KHDRBS3
Meleagris gallopavo
ENSMGAG00000012888
I
0.940
KHDRBS3
Spermophilus tridecemlineatus
ENSSTOG00000008710
I
0.940
KHDRBS3
Ochotona princeps
ENSOPRG00000000404
I
0.940
KHDRBS3
Oryctolagus cuniculus
ENSOCUG00000000743
I
0.940
KHDRBS3
Gallus gallus
ENSGALG00000016203
I
0.940
KHDRBS3
Pteropus vampyrus
ENSPVAG00000017021
I
0.929
KHDRBS3
Takifugu rubripes
ENSTRUG00000013451
I
0.928
KHDRBS3
Oryzias latipes
ENSORLG00000013441
I
0.928
KHDRBS3
Tetraodon nigroviridis
ENSTNIG00000014021
I
0.928
KHDRBS3
Gasterosteus aculeatus
ENSGACG00000008847
I
0.916
KHDRBS3
Sorex araneus
ENSSARG00000011751
I
0.841
Khdrbs3
Rattus norvegicus
ENSRNOG00000009539
I
0.841
KHDRBS2
Meleagris gallopavo
ENSMGAG00000013877
I
0.833
KHDRBS2
Macaca mulatta
ENSMMUG00000003329
I
0.833
LOC100395662
Callithrix jacchus
ENSCJAG00000001766
I
0.833
KHDRBS2
Oryctolagus cuniculus
ENSOCUG00000012344
I
0.833
KHDRBS2
Anolis carolinensis
ENSACAG00000006691
I
0.833
KHDRBS2
Sus scrofa
ENSSSCG00000001490
I
0.833
KHDRBS2
Loxodonta africana
ENSLAFG00000006655
I
0.833
Khdrbs2
Rattus norvegicus
ENSRNOG00000012284
I
0.833
KHDRBS2
Pan troglodytes
ENSPTRG00000018311
I
0.833
KHDRBS2
Taeniopygia guttata
ENSTGUG00000012786
I
0.833
KHDRBS2
Homo sapiens
ENSG00000112232
D
0.833
KHDRBS2
Tarsius syrichta
ENSTSYG00000007203
I
0.833
LOC100056966
Equus caballus
ENSECAG00000021541
I
0.833
KHDRBS2
Erinaceus europaeus
ENSEEUG00000003986
I
0.833
KHDRBS2
Tursiops truncatus
ENSTTRG00000005591
I
0.833
KHDRBS2
Cavia porcellus
ENSCPOG00000025621
I
0.833
KHDRBS2
Gorilla gorilla
ENSGGOG00000025068
I
0.833
KHDRBS2
Bos taurus
ENSBTAG00000043990
I
0.833
KHDRBS2
Gallus gallus
ENSGALG00000016276
I
0.833
KHDRBS2
Canis familiaris
ENSCAFG00000002470
I
0.833
KHDRBS2
Dasypus novemcinctus
ENSDNOG00000014028
I
0.821
Khdrbs2
Dipodomys ordii
ENSDORG00000005701
I
0.821
Khdrbs2
Mus musculus
ENSMUSG00000026058
I
0.821
KHDRBS2
Vicugna pacos
ENSVPAG00000001469
I
0.821
KHDRBS2
Monodelphis domestica
ENSMODG00000018714
I
0.821
KHDRBS2
Gasterosteus aculeatus
ENSGACG00000006097
I
0.810
KHDRBS3
Tarsius syrichta
ENSTSYG00000004106
I
0.805
KHDRBS2
Takifugu rubripes
ENSTRUG00000015760
I
0.798
khdrbs2
Danio rerio
ENSDARG00000069469
I
0.798
KHDRBS2
Procavia capensis
ENSPCAG00000001426
I
0.780
KHDRBS2
Oryzias latipes
ENSORLG00000010165
I
0.774
Ame_R015982
Ailuropoda melanoleuca
Ame_R015982
I
0.756
KHDRBS2
Myotis lucifugus
ENSMLUG00000005484
I
0.756
KHDRBS1
Vicugna pacos
ENSVPAG00000006966
I
0.729
KHDRBS1
Tursiops truncatus
ENSTTRG00000009637
I
0.729
KHDRBS1
Tarsius syrichta
ENSTSYG00000004921
I
0.729
KHDRBS1
Tupaia belangeri
ENSTBEG00000016857
I
0.729
Ame_R010128
Ailuropoda melanoleuca
Ame_R010128
I
0.729
KHDRBS1
Spermophilus tridecemlineatus
ENSSTOG00000014138
I
0.729
KHDRBS1
Pteropus vampyrus
ENSPVAG00000013289
I
0.729
Khdrbs1
Mus musculus
ENSMUSG00000028790
D
0.729
KHDRBS1
Homo sapiens
ENSG00000121774
D
0.729
KHDR1_CHICK
Gallus gallus
ENSGALG00000003272
I
0.729
KHDRBS1
Gorilla gorilla
ENSGGOG00000008633
I
0.729
Q29RQ2_BOVIN
Bos taurus
ENSBTAG00000012497
I
0.729
KHDRBS1
Felis catus
ENSFCAG00000006511
I
0.729
KHDRBS1
Equus caballus
ENSECAG00000019346
I
0.729
ENSCHOG00000006973
Choloepus hoffmanni
ENSCHOG00000006973
I
0.729
LOC100414412
Callithrix jacchus
ENSCJAG00000006580
I
0.729
KHDRBS1
Canis familiaris
ENSCAFG00000010777
I
0.729
KHDRBS1
Cavia porcellus
ENSCPOG00000024148
I
0.729
KHDRBS1
Pan troglodytes
ENSPTRG00000000469
I
0.729
KHDRBS1
Loxodonta africana
ENSLAFG00000009414
I
0.729
KHDRBS1
Meleagris gallopavo
ENSMGAG00000004455
I
0.729
KHDRBS1
Oryctolagus cuniculus
ENSOCUG00000007654
I
0.729
KHDRBS1
Ochotona princeps
ENSOPRG00000005131
I
0.729
KHDRBS1
Ornithorhynchus anatinus
ENSOANG00000012357
I
0.729
XM_001365874.1
Monodelphis domestica
ENSMODG00000017551
I
0.729
KHDRBS1
Procavia capensis
ENSPCAG00000009844
I
0.729
ENSPPYG00000001605
Pongo pygmaeus
ENSPPYG00000001605
I
0.729
KHDRBS1
Macaca mulatta
ENSMMUG00000023438
I
0.729
KHDRBS1
Taeniopygia guttata
ENSTGUG00000017346
I
0.726
gw.576.16.1
Branchiostoma floridae
gw.576.16.1
I
0.720
KHDRBS1
Anolis carolinensis
ENSACAG00000011693
I
0.718
KHDRBS1
Sorex araneus
ENSSARG00000008479
I
0.714
fgenesh2_pg.scaffold_166000064
Branchiostoma floridae
fgenesh2_pg.scaffold_166000064
I
0.707