CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PredSwiss_EST208.1
(
Pneumocystis carinii
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
PredSwiss_EST208.1
T21453_0.6
Pneumocystis Genome Project (2010-Oct-5)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PredSwiss_EST208.1
KH
153
209
TKGSTQKMIKEETGADVTTRGKYYPDKGLATERDPPLYLHVTXTTKAGLEAAVKKIE
PredSwiss_EST208.1
KH
258
321
LRANIVGPNGQYVKHVQQETKCRVQIKGIGSGFMEPATGRESDEPLYLHITGPDPNEVQRAKSL
Links
Other
KH
family RBPs
Other
Pneumocystis carinii
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GSTUMT00003892001
Tuber melanosporum
GSTUMT00003892001
N
0.744
SS1G_03925
Sclerotinia sclerotiorum
SS1G_03925
N
0.730
CPSG_03190
Coccidioides posadasii
CPSG_03190
N
0.730
CIMG_04080
Coccidioides immitis
CIMG_04080
N
0.730
BC1G_04554
Botrytis cinerea
BC1G_04554
N
0.715
An04g01620
Aspergillus niger
CADANGAG00003873
N
0.712
ANIA_04431
Aspergillus nidulans
CADANIAG00006023
N
0.704
PABG_07569
Paracoccidioides brasiliensis
PABG_07569
N
0.704
BDBG_02628
Blastomyces dermatitidis
BDBG_02628
N
0.704
PMAA_027060
Penicillium marneffei
PMAA_027060
N
0.702