CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABG_07569
(
Paracoccidioides brasiliensis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
PABG_07569
T17746_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PABG_07569T0
KH
143
198
TKGATQRMIKEETGADVTTRGSYFPDKSMATAANPPLYLHITSTTKEGLDKAIAKI
PABG_07569T0
KH
246
314
IPGFNLRAQVVGPGGAYVKHIQQETRCRVQIKGRGSGFTEHGTGRESDEPMYLHVAGPDPKEVQNAKSL
Links
Other
KH
family RBPs
Other
Paracoccidioides brasiliensis
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BDBG_02628
Blastomyces dermatitidis
BDBG_02628
N
0.960
HCAG_05583
Histoplasma capsulatum
HCAG_05583
N
0.952
SS1G_03925
Sclerotinia sclerotiorum
SS1G_03925
N
0.857
GSTUMT00003892001
Tuber melanosporum
GSTUMT00003892001
N
0.848
An04g01620
Aspergillus niger
CADANGAG00003873
N
0.840
NFIA_109000
Neosartorya fischeri
CADNFIAG00009878
N
0.833
estExt_Genewise1Plus.C_100691
Neurospora discreta
estExt_Genewise1Plus.C_100691
N
0.832
TESG_01394
Trichophyton tonsurans
TESG_01394
N
0.832
TERG_07604
Trichophyton rubrum
TERG_07604
N
0.832
MGYG_01738
Microsporum gypseum
MGYG_01738
N
0.832
Pa_3_6460
Podospora anserina
Pa_3_6460
N
0.825
CIMG_04080
Coccidioides immitis
CIMG_04080
N
0.825
estExt_fgenesh1_pm.C_70243
Myceliophthora thermophila
estExt_fgenesh1_pm.C_70243
N
0.825
CPSG_03190
Coccidioides posadasii
CPSG_03190
N
0.825
ACLA_046540
Aspergillus clavatus
CADACLAG00004448
N
0.825
AFUA_4G07220
Aspergillus fumigatus
CADAFUAG00008115
N
0.825
ANIA_04431
Aspergillus nidulans
CADANIAG00006023
N
0.824
MCYG_01186
Microsporum canis
MCYG_01186
N
0.824
estExt_fgenesh1_pg.C_130006
Neurospora tetrasperma
estExt_fgenesh1_pg.C_130006
N
0.824
fgenesh1_pm.C_scaffold_17000077
Mycosphaerella fijiensis
fgenesh1_pm.C_scaffold_17000077
N
0.816
AFLA_112630
Aspergillus flavus
CADAFLAG00004997
N
0.816
AO090023000853
Aspergillus oryzae
CADAORAG00007942
N
0.816
PMAA_027060
Penicillium marneffei
PMAA_027060
N
0.808
estExt_Genewise1Plus.C_chr_120306
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_120306
N
0.802
estExt_Genewise1.C_21959
Cryphonectria parasitica
estExt_Genewise1.C_21959
N
0.802
fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA
Thielavia terrestris
fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA
N
0.802
Pc22g18420
Penicillium chrysogenum
Pc22g18420
N
0.792
GLRG_05217
Colletotrichum graminicola
GLRG_05217
N
0.787
BC1G_04554
Botrytis cinerea
BC1G_04554
N
0.769
VDAG_01960
Verticillium dahliae
VDAG_01960
N
0.768
VDBG_01592
Verticillium albo atrum
VDBG_01592
N
0.768
fgenesh1_pm.C_scaffold_12000103
Trichoderma atroviride
fgenesh1_pm.C_scaffold_12000103
N
0.762
FOXG_08033
Fusarium oxysporum
FOXG_08033
N
0.754
gw1.2.55.1
Trichoderma virens
gw1.2.55.1
N
0.746
FVEG_04953
Fusarium verticillioides
FVEG_04953
N
0.730
FGSG_12899
Fusarium graminearum
FGSG_12899
N
0.722
PTRG_04405
Pyrenophora tritici repentis
PTRG_04405
N
0.706
PredSwiss_EST208.1
Pneumocystis carinii
PredSwiss_EST208.1
N
0.704