CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CIMG_04080
(
Coccidioides immitis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
CIMG_04080
T17570_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CIMG_04080T0
KH
143
198
TKGATQRMIKEETGADVTTRGSYLPDKSMATPSNPPLYLHVTSTTKEGLEKAIEKI
CIMG_04080T0
KH
249
314
NLRAQVVGQGGQYVKHIQQETGCRVQIKGRGSGFKEHGTNQESDEPMYLHVLGPDPNEVQKAKELC
Links
Other
KH
family RBPs
Other
Coccidioides immitis
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPSG_03190
Coccidioides posadasii
CPSG_03190
N
1.000
PMAA_027060
Penicillium marneffei
PMAA_027060
N
0.852
MGYG_01738
Microsporum gypseum
MGYG_01738
N
0.841
TESG_01394
Trichophyton tonsurans
TESG_01394
N
0.841
MCYG_01186
Microsporum canis
MCYG_01186
N
0.841
TERG_07604
Trichophyton rubrum
TERG_07604
N
0.841
BDBG_02628
Blastomyces dermatitidis
BDBG_02628
N
0.825
PABG_07569
Paracoccidioides brasiliensis
PABG_07569
N
0.825
HCAG_05583
Histoplasma capsulatum
HCAG_05583
N
0.817
GSTUMT00003892001
Tuber melanosporum
GSTUMT00003892001
N
0.810
SS1G_03925
Sclerotinia sclerotiorum
SS1G_03925
N
0.810
estExt_fgenesh1_pm.C_70243
Myceliophthora thermophila
estExt_fgenesh1_pm.C_70243
N
0.802
BC1G_04554
Botrytis cinerea
BC1G_04554
N
0.792
estExt_Genewise1Plus.C_100691
Neurospora discreta
estExt_Genewise1Plus.C_100691
N
0.786
AFUA_4G07220
Aspergillus fumigatus
CADAFUAG00008115
N
0.786
gw1.2.55.1
Trichoderma virens
gw1.2.55.1
N
0.780
fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA
Thielavia terrestris
fgenesh2_kg.6_#_197_#_798_1_CCPH_CCPI_EXTA
N
0.780
estExt_fgenesh1_pg.C_130006
Neurospora tetrasperma
estExt_fgenesh1_pg.C_130006
N
0.778
NFIA_109000
Neosartorya fischeri
CADNFIAG00009878
N
0.778
ACLA_046540
Aspergillus clavatus
CADACLAG00004448
N
0.778
FOXG_08033
Fusarium oxysporum
FOXG_08033
N
0.772
FVEG_04953
Fusarium verticillioides
FVEG_04953
N
0.764
GLRG_05217
Colletotrichum graminicola
GLRG_05217
N
0.764
Pa_3_6460
Podospora anserina
Pa_3_6460
N
0.764
fgenesh1_pm.C_scaffold_12000103
Trichoderma atroviride
fgenesh1_pm.C_scaffold_12000103
N
0.762
An04g01620
Aspergillus niger
CADANGAG00003873
N
0.762
estExt_Genewise1.C_21959
Cryphonectria parasitica
estExt_Genewise1.C_21959
N
0.754
ANIA_04431
Aspergillus nidulans
CADANIAG00006023
N
0.754
AFLA_112630
Aspergillus flavus
CADAFLAG00004997
N
0.754
AO090023000853
Aspergillus oryzae
CADAORAG00007942
N
0.754
FGSG_12899
Fusarium graminearum
FGSG_12899
N
0.748
fgenesh1_pm.C_scaffold_17000077
Mycosphaerella fijiensis
fgenesh1_pm.C_scaffold_17000077
N
0.746
estExt_Genewise1Plus.C_chr_120306
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_120306
N
0.746
VDAG_01960
Verticillium dahliae
VDAG_01960
N
0.730
VDBG_01592
Verticillium albo atrum
VDBG_01592
N
0.730
PredSwiss_EST208.1
Pneumocystis carinii
PredSwiss_EST208.1
N
0.730
e_gw1.3.1237.1
Nectria haematococca
e_gw1.3.1237.1
N
0.724
Pc22g18420
Penicillium chrysogenum
Pc22g18420
N
0.714