CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
e_gw.10.151.1
(
Branchiostoma floridae
)
KH,S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00575 (S1)
IPR018111
IPR003029
e_gw.10.151.1
T22415_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.10.151.1
KH
566
623
SEQLKVPMAKRAQFVGPGGYNIRKITAETGVTITQVDEETFSVFAPNTAAMNEAREEI
e_gw.10.151.1
S1
635
709
LDFGAIYTATITEIRESGVMVKLFPTMQPTLLHNSQLDHRRVSHPSALGFDVGQEMSVKYFGRDPATGMMRLSRK
Links
Other
KH,S1
family RBPs
Other
Branchiostoma floridae
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw.63.132.1
Branchiostoma floridae
gw.63.132.1
N
1.000
PNPT1
Oryzias latipes
ENSORLG00000004335
N
0.731
PNPT1
Procavia capensis
ENSPCAG00000010806
N
0.731
PNPT1
Ochotona princeps
ENSOPRG00000010232
N
0.709
PNPT1
Monodelphis domestica
ENSMODG00000001984
N
0.709
PNPT1
Myotis lucifugus
ENSMLUG00000003886
N
0.709
PNPT1
Tetraodon nigroviridis
ENSTNIG00000007460
N
0.709
PNPT1
Anolis carolinensis
ENSACAG00000003692
N
0.709
PNPT1
Takifugu rubripes
ENSTRUG00000005495
N
0.701
pnpt1
Xenopus tropicalis
ENSXETG00000006075
N
0.701
Pnpt1
Mus musculus
ENSMUSG00000020464
N
0.701
PNPT1
Cavia porcellus
ENSCPOG00000011008
N
0.701
PNPT1
Homo sapiens
ENSG00000138035
N
0.701
PNPT1
Pan troglodytes
ENSPTRG00000011934
N
0.701