CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgeneshTA2_pg.C_scaffold_3000241
(
Trichoplax adhaerens
)
La
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
IPR006630
fgeneshTA2_pg.C_scaffold_3000241
T23066_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgeneshTA2_pg.C_scaffold_3000241
La
105
162
LKNELEYYFSRENVASDAYLLSQMDSDQYVPIKTIATFNTIKQLTSDIDLITEILKEC
Links
Other
La
family RBPs
Other
Trichoplax adhaerens
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.29.70.1
Daphnia pulex
e_gw1.29.70.1
N
0.724
DGIL_AUG5s5549g4t1
Acyrtosiphon pisum
DGIL_AUG5s5549g4t1
N
0.724
fgenesh2_pg.scaffold_154000069
Branchiostoma floridae
fgenesh2_pg.scaffold_154000069
N
0.707
nasonia_NCBI_hmm376894
Nasonia vitripennis
nasonia_NCBI_hmm376894
N
0.707