CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9N014_POPTR
(
Populus trichocarpa
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
POPTR_0008s23200
T24427_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0008s23200.1
PUF
128
162
KMKGKIPEIASSHVSSRVLQTCVKYCSQTERDAVF
POPTR_0008s23200.1
PUF
164
198
ELKPHFLTFASNKYAIHLVTKMLDNASKKQLAEFI
Links
Other
PUF
family RBPs
Other
Populus trichocarpa
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9HXE2_POPTR
Populus trichocarpa
POPTR_0010s00780
N
0.929
29726.m004103
Ricinus communis
29726.m004103
N
0.929
ppa002599m
Prunus persica
ppa002599m
N
0.829
Glyma17g03290.1
Glycine max
Glyma17g03290.1
N
0.786
Cucsa.069370
Cucumis sativus
Cucsa.069370
N
0.786
Al_scaffold_0769_1
Arabidopsis lyrata
Al_scaffold_0769_1
N
0.729
XM_002885119.1
Arabidopsis lyrata
Al_scaffold_0003_1757
N
0.714