fgenesh1_pm.C_scaffold_1000366 (Trichoderma atroviride)
RanBP ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1) 		IPR001876
IPR000504 		fgenesh1_pm.C_scaffold_1000366 T25814_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_1000366 RRM 255 309
fgenesh1_pm.C_scaffold_1000366 RanBP ZF 325 339
fgenesh1_pm.C_scaffold_1000366 RanBP ZF 390 421

Links

Other RanBP ZF,RRM family RBPs
Other Trichoderma atroviride RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FVEG_05191 Fusarium verticillioides FVEG_05191 N 0.815
estExt_Genewise1.C_sca_6_chr9_2_00515 Nectria haematococca estExt_Genewise1.C_sca_6_chr9_2_00515 N 0.742
estExt_fgenesh1_pm.C_10481 Trichoderma reesei estExt_fgenesh1_pm.C_10481 N 0.742
e_gw1.4.1358.1 Trichoderma virens e_gw1.4.1358.1 N 0.742
FOXG_02027 Fusarium oxysporum FOXG_02027 N 0.742
estExt_fgenesh1_pg.C_10521 Neurospora tetrasperma estExt_fgenesh1_pg.C_10521 N 0.735
estExt_Genewise1.C_11720 Neurospora discreta estExt_Genewise1.C_11720 N 0.735
estExt_fgenesh2_pm.C_20549 Thielavia terrestris estExt_fgenesh2_pm.C_20549 N 0.735
NCU06684 Neurospora crassa NCU06684 N 0.735
GLRG_04960 Colletotrichum graminicola GLRG_04960 N 0.735
VDAG_01381 Verticillium dahliae VDAG_01381 N 0.735
CHGG_07745 Chaetomium globosum CHGG_07745 N 0.727
estExt_fgenesh1_pm.C_30636 Myceliophthora thermophila estExt_fgenesh1_pm.C_30636 N 0.720
estExt_Genewise1Plus.C_130308 Cryphonectria parasitica estExt_Genewise1Plus.C_130308 N 0.712
MGG_07327 Magnaporthe oryzae MGG_07327 N 0.712