CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pm.C_scaffold_1000366
(
Trichoderma atroviride
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
fgenesh1_pm.C_scaffold_1000366
T25814_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_1000366
RRM
255
309
LHMSGLPHDTTQSELESWFTQFGGRPIAFWTLRTPEQHKPTGTGFAVFSSHEEVS
fgenesh1_pm.C_scaffold_1000366
RanBP ZF
325
339
YERRTACFRCSFPAV
fgenesh1_pm.C_scaffold_1000366
RanBP ZF
390
421
RAGDWKCGNEVCGYHNFAKNVCCLRCGASRAG
Links
Other
RanBP ZF,RRM
family RBPs
Other
Trichoderma atroviride
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FVEG_05191
Fusarium verticillioides
FVEG_05191
N
0.815
estExt_Genewise1.C_sca_6_chr9_2_00515
Nectria haematococca
estExt_Genewise1.C_sca_6_chr9_2_00515
N
0.742
estExt_fgenesh1_pm.C_10481
Trichoderma reesei
estExt_fgenesh1_pm.C_10481
N
0.742
e_gw1.4.1358.1
Trichoderma virens
e_gw1.4.1358.1
N
0.742
FOXG_02027
Fusarium oxysporum
FOXG_02027
N
0.742
estExt_fgenesh1_pg.C_10521
Neurospora tetrasperma
estExt_fgenesh1_pg.C_10521
N
0.735
estExt_Genewise1.C_11720
Neurospora discreta
estExt_Genewise1.C_11720
N
0.735
estExt_fgenesh2_pm.C_20549
Thielavia terrestris
estExt_fgenesh2_pm.C_20549
N
0.735
NCU06684
Neurospora crassa
NCU06684
N
0.735
GLRG_04960
Colletotrichum graminicola
GLRG_04960
N
0.735
VDAG_01381
Verticillium dahliae
VDAG_01381
N
0.735
CHGG_07745
Chaetomium globosum
CHGG_07745
N
0.727
estExt_fgenesh1_pm.C_30636
Myceliophthora thermophila
estExt_fgenesh1_pm.C_30636
N
0.720
estExt_Genewise1Plus.C_130308
Cryphonectria parasitica
estExt_Genewise1Plus.C_130308
N
0.712
MGG_07327
Magnaporthe oryzae
MGG_07327
N
0.712