CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FVEG_05191
(
Fusarium verticillioides
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FVEG_05191
T25428_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FVEG_05191T0
RRM
255
312
LHMSGLPHDTTQSELESWFTQFGGRPIAFWTLRTPEQHKPTGTGFAVFSSHEGDVCAA
FVEG_05191T0
RanBP ZF
323
351
RPGDWTCPSCGFSNFQRRTACFRCSFPAV
FVEG_05191T0
RanBP ZF
406
437
RAGDWKCGNEVCGYHNFAKNVCCLRCGASRAG
Links
Other
RanBP ZF,RRM
family RBPs
Other
Fusarium verticillioides
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pm.C_10481
Trichoderma reesei
estExt_fgenesh1_pm.C_10481
N
0.856
e_gw1.4.1358.1
Trichoderma virens
e_gw1.4.1358.1
N
0.856
estExt_Genewise1.C_sca_6_chr9_2_00515
Nectria haematococca
estExt_Genewise1.C_sca_6_chr9_2_00515
N
0.856
FOXG_02027
Fusarium oxysporum
FOXG_02027
N
0.856
GLRG_04960
Colletotrichum graminicola
GLRG_04960
N
0.848
NCU06684
Neurospora crassa
NCU06684
N
0.848
estExt_fgenesh2_pm.C_20549
Thielavia terrestris
estExt_fgenesh2_pm.C_20549
N
0.848
estExt_Genewise1.C_11720
Neurospora discreta
estExt_Genewise1.C_11720
N
0.848
VDAG_01381
Verticillium dahliae
VDAG_01381
N
0.848
estExt_fgenesh1_pg.C_10521
Neurospora tetrasperma
estExt_fgenesh1_pg.C_10521
N
0.848
CHGG_07745
Chaetomium globosum
CHGG_07745
N
0.841
estExt_fgenesh1_pm.C_30636
Myceliophthora thermophila
estExt_fgenesh1_pm.C_30636
N
0.833
estExt_Genewise1Plus.C_130308
Cryphonectria parasitica
estExt_Genewise1Plus.C_130308
N
0.826
MGG_07327
Magnaporthe oryzae
MGG_07327
N
0.826
fgenesh1_pm.C_scaffold_1000366
Trichoderma atroviride
fgenesh1_pm.C_scaffold_1000366
N
0.815
GSTUMT00003821001
Tuber melanosporum
GSTUMT00003821001
N
0.811
BC1G_02626
Botrytis cinerea
BC1G_02626
N
0.805
Pa_2_11350
Podospora anserina
Pa_2_11350
N
0.803
SS1G_01772
Sclerotinia sclerotiorum
SS1G_01772
N
0.797
PMAA_081320
Penicillium marneffei
PMAA_081320
N
0.795
BDBG_01534
Blastomyces dermatitidis
BDBG_01534
N
0.788
fgenesh1_pm.00866_#_655
Aspergillus carbonarius
fgenesh1_pm.00866_#_655
N
0.788
NFIA_039950
Neosartorya fischeri
CADNFIAG00002962
N
0.788
AFLA_003900
Aspergillus flavus
CADAFLAG00010456
N
0.788
ACLA_003080
Aspergillus clavatus
CADACLAG00000382
N
0.788
Pc21g14870
Penicillium chrysogenum
Pc21g14870
N
0.788
ATEG_09171
Aspergillus terreus
CADATEAG00003372
N
0.788
AFUA_5G02160
Aspergillus fumigatus
CADAFUAG00002676
N
0.788
AO090102000274
Aspergillus oryzae
CADAORAG00009617
N
0.788
ANIA_08055
Aspergillus nidulans
CADANIAG00004081
N
0.788
An02g10780
Aspergillus niger
CADANGAG00002596
N
0.788
EAT77189.2
Phaeosphaeria nodorum
EAT77189.2
N
0.782
AB01016.1
Alternaria brassicicola
AB01016.1
N
0.782
PTRG_11004
Pyrenophora tritici repentis
PTRG_11004
N
0.782
estExt_Genewise1.C_70493
Cochliobolus heterostrophus C5
estExt_Genewise1.C_70493
N
0.782
SNOG_15524
Stagonospora nodorum
SNOG_15524
N
0.782
UREG_03978
Uncinocarpus reesii
UREG_03978
N
0.780
CPSG_00638
Coccidioides posadasii
CPSG_00638
N
0.780
CIMG_06432
Coccidioides immitis
CIMG_06432
N
0.780
PABG_00314
Paracoccidioides brasiliensis
PABG_00314
N
0.780
MCYG_02047
Microsporum canis
MCYG_02047
N
0.765
ARB_00799
Arthroderma benhamiae
ARB_00799
N
0.765
MGYG_04027
Microsporum gypseum
MGYG_04027
N
0.765
TEQG_06114
Trichophyton equinum
TEQG_06114
N
0.765
TRV_00689
Trichophyton verrucosum
TRV_00689
N
0.765
TESG_06793
Trichophyton tonsurans
TESG_06793
N
0.765
TERG_04360
Trichophyton rubrum
TERG_04360
N
0.765
estExt_fgenesh1_pm.C_chr_80348
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_80348
N
0.759
estExt_Genewise1.C_50445
Mycosphaerella fijiensis
estExt_Genewise1.C_50445
N
0.752