CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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VDAG_01381
(
Verticillium dahliae
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
VDAG_01381
T25464_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDAG_01381T0
RRM
256
326
LHMSGLPHDTTQSELESWFTQFGGRPIAFWTLRTPEQHKPTGSGFAVFSSHEEAAESLCMNGRALNEKAIE
VDAG_01381T0
RanBP ZF
353
381
RPGDWTCPSCGFSNFQRRTACFRCSFPAV
VDAG_01381T0
RanBP ZF
436
467
RAGDWKCGNEVCGYHNFAKNVCCLRCGASRAG
Links
Other
RanBP ZF,RRM
family RBPs
Other
Verticillium dahliae
RBPs
51 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GLRG_04960
Colletotrichum graminicola
GLRG_04960
N
1.000
estExt_fgenesh1_pm.C_10481
Trichoderma reesei
estExt_fgenesh1_pm.C_10481
N
0.992
e_gw1.4.1358.1
Trichoderma virens
e_gw1.4.1358.1
N
0.992
FOXG_02027
Fusarium oxysporum
FOXG_02027
N
0.992
estExt_Genewise1.C_sca_6_chr9_2_00515
Nectria haematococca
estExt_Genewise1.C_sca_6_chr9_2_00515
N
0.992
NCU06684
Neurospora crassa
NCU06684
N
0.985
estExt_fgenesh1_pg.C_10521
Neurospora tetrasperma
estExt_fgenesh1_pg.C_10521
N
0.985
estExt_Genewise1.C_11720
Neurospora discreta
estExt_Genewise1.C_11720
N
0.985
estExt_fgenesh2_pm.C_20549
Thielavia terrestris
estExt_fgenesh2_pm.C_20549
N
0.985
CHGG_07745
Chaetomium globosum
CHGG_07745
N
0.977
estExt_fgenesh1_pm.C_30636
Myceliophthora thermophila
estExt_fgenesh1_pm.C_30636
N
0.970
estExt_Genewise1Plus.C_130308
Cryphonectria parasitica
estExt_Genewise1Plus.C_130308
N
0.962
MGG_07327
Magnaporthe oryzae
MGG_07327
N
0.962
BC1G_02626
Botrytis cinerea
BC1G_02626
N
0.955
Pa_2_11350
Podospora anserina
Pa_2_11350
N
0.955
SS1G_01772
Sclerotinia sclerotiorum
SS1G_01772
N
0.947
GSTUMT00003821001
Tuber melanosporum
GSTUMT00003821001
N
0.947
PMAA_081320
Penicillium marneffei
PMAA_081320
N
0.932
ACLA_003080
Aspergillus clavatus
CADACLAG00000382
N
0.924
Pc21g14870
Penicillium chrysogenum
Pc21g14870
N
0.924
An02g10780
Aspergillus niger
CADANGAG00002596
N
0.924
AFLA_003900
Aspergillus flavus
CADAFLAG00010456
N
0.924
AFUA_5G02160
Aspergillus fumigatus
CADAFUAG00002676
N
0.924
AO090102000274
Aspergillus oryzae
CADAORAG00009617
N
0.924
ANIA_08055
Aspergillus nidulans
CADANIAG00004081
N
0.924
fgenesh1_pm.00866_#_655
Aspergillus carbonarius
fgenesh1_pm.00866_#_655
N
0.924
NFIA_039950
Neosartorya fischeri
CADNFIAG00002962
N
0.924
ATEG_09171
Aspergillus terreus
CADATEAG00003372
N
0.924
estExt_Genewise1.C_70493
Cochliobolus heterostrophus C5
estExt_Genewise1.C_70493
N
0.917
EAT77189.2
Phaeosphaeria nodorum
EAT77189.2
N
0.917
PTRG_11004
Pyrenophora tritici repentis
PTRG_11004
N
0.917
AB01016.1
Alternaria brassicicola
AB01016.1
N
0.917
SNOG_15524
Stagonospora nodorum
SNOG_15524
N
0.917
BDBG_01534
Blastomyces dermatitidis
BDBG_01534
N
0.917
PABG_00314
Paracoccidioides brasiliensis
PABG_00314
N
0.909
CPSG_00638
Coccidioides posadasii
CPSG_00638
N
0.909
CIMG_06432
Coccidioides immitis
CIMG_06432
N
0.909
UREG_03978
Uncinocarpus reesii
UREG_03978
N
0.909
TEQG_06114
Trichophyton equinum
TEQG_06114
N
0.894
ARB_00799
Arthroderma benhamiae
ARB_00799
N
0.894
TESG_06793
Trichophyton tonsurans
TESG_06793
N
0.894
MGYG_04027
Microsporum gypseum
MGYG_04027
N
0.894
TERG_04360
Trichophyton rubrum
TERG_04360
N
0.894
TRV_00689
Trichophyton verrucosum
TRV_00689
N
0.894
MCYG_02047
Microsporum canis
MCYG_02047
N
0.894
estExt_fgenesh1_pm.C_chr_80348
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_80348
N
0.887
estExt_Genewise1.C_50445
Mycosphaerella fijiensis
estExt_Genewise1.C_50445
N
0.880
FVEG_05191
Fusarium verticillioides
FVEG_05191
N
0.848
YALI0F21835g
Yarrowia lipolytica
YALI0F21835g
N
0.750
fgenesh1_pm.C_scaffold_1000366
Trichoderma atroviride
fgenesh1_pm.C_scaffold_1000366
N
0.735
CPAG_02028
Candida parapsilosis
CPAG_02028
N
0.701