CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s21g11t1
(
Acyrtosiphon pisum
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
DGIL_AUG5s21g11t1
T26153_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s21g11t1
RanBP ZF
29
60
SDGDWICPNAQCANINFARRTHCNRCNKERED
DGIL_AUG5s21g11t1
RanBP ZF
84
113
SADDWQCSKCGNVNWARRSQCNMCNAPKFA
Links
Other
RanBP ZF
family RBPs
Other
Acyrtosiphon pisum
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm3854
Tribolium castaneum
amel4_ncbi_hmm3854
N
0.806
amel4_ncbi_hmm3854
Apis mellifera
amel4_ncbi_hmm3854
N
0.806
GH20335
Drosophila grimshawi
FBgn0127799
N
0.726
gw.348.48.1
Branchiostoma floridae
gw.348.48.1
I
0.726
PHUM217580
Pediculus humanus
PHUM217580
N
0.726
125254
Helobdella robusta
125254
I
0.710
AAH84309
Xenopus laevis
AAH84309
I
0.710
e_gw1.17.447.1
Daphnia pulex
e_gw1.17.447.1
N
0.710
GJ21255
Drosophila virilis
FBgn0208388
N
0.710
ZRANB2
Gasterosteus aculeatus
ENSGACG00000009457
I
0.710
zranb2
Danio rerio
ENSDARG00000044332
I
0.710
ZRAB2_CHICK
Gallus gallus
ENSGALG00000011340
I
0.710
zranb2
Xenopus tropicalis
ENSXETG00000024108
I
0.710
GI20006
Drosophila mojavensis
FBgn0142742
N
0.710
ZRANB2
Anolis carolinensis
ENSACAG00000004293
I
0.710