CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM217580
(
Pediculus humanus
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
PHUM217580
T27070_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM217580-PA
RanBP ZF
10
40
EGDWICSDPHCANINFARRTQCNRCGSEKSE
PHUM217580-PA
RanBP ZF
64
93
SADDWQCNKCGNVNWARRQQCNVCNAPRFG
Links
Other
RanBP ZF
family RBPs
Other
Pediculus humanus
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm3854
Apis mellifera
amel4_ncbi_hmm3854
N
0.754
amel4_ncbi_hmm3854
Tribolium castaneum
amel4_ncbi_hmm3854
N
0.754
BGIBMGA007567
Bombyx mori
BGIBMGA007567
N
0.738
DGIL_AUG5s21g11t1
Acyrtosiphon pisum
DGIL_AUG5s21g11t1
N
0.726
XP_785599.1
Strongylocentrotus purpuratus
XP_785599.1
N
0.721
XP_001189132.1
Strongylocentrotus purpuratus
XP_001189132.1
N
0.721
125254
Helobdella robusta
125254
I
0.721
e_gw1.17.447.1
Daphnia pulex
e_gw1.17.447.1
N
0.710
gw1.1.429.1
Lottia gigantea
gw1.1.429.1
N
0.710
gw.348.48.1
Branchiostoma floridae
gw.348.48.1
I
0.710
XP_002165332.1
Hydra magnipapillata
XP_002165332.1
N
0.710