CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBCK1
(
Oryzias latipes
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
ENSORLG00000006036
T26686_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000007586
RanBP ZF
192
219
LGWSCKTCTYVNKPTRPGCEMCGDERPD
Links
Other
RanBP ZF
family RBPs
Other
Oryzias latipes
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSGACG00000002544
Gasterosteus aculeatus
ENSGACG00000002544
N
0.750
e_gw.269.58.1
Branchiostoma floridae
e_gw.269.58.1
N
0.724
RBCK1
Anolis carolinensis
ENSACAG00000008195
N
0.724
fgenesh2_pm.scaffold_19000033
Branchiostoma floridae
fgenesh2_pm.scaffold_19000033
N
0.724
rbck1
Danio rerio
ENSDARG00000031954
N
0.714