CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NUP153
(
Oryzias latipes
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
ENSORLG00000012674
T26691_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000015879
RanBP ZF
670
698
PEGWSCDVCLVQNKQSNLKCVCCMAPKPN
ENSORLP00000015879
RanBP ZF
740
769
PAGTWDCDTCLVVNKPDAVKCVACETAKPG
ENSORLP00000015879
RanBP ZF
809
838
PEGAWECDTCLVQNKAEDLKCVTCTAAKPG
ENSORLP00000015879
RanBP ZF
866
895
PEGSWECDVCCVQNKAADVKCVACQAVKPG
Links
Other
RanBP ZF
family RBPs
Other
Oryzias latipes
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NUP153
Gasterosteus aculeatus
ENSGACG00000005389
N
0.807
NUP153
Tetraodon nigroviridis
ENSTNIG00000009182
N
0.782
NUP153
Takifugu rubripes
ENSTRUG00000010163
N
0.773
NUP153
Danio rerio
ENSDARG00000020323
N
0.742