B9ILP3_POPTR (Populus trichocarpa)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 POPTR_0018s08970 T27098_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s08970.1 RanBP ZF 125 156

Links

Other RanBP ZF family RBPs
Other Populus trichocarpa RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N7C3_POPTR Populus trichocarpa POPTR_0006s16350 N 0.906
cassava29937.valid.m1 Manihot esculenta cassava29937.valid.m1 N 0.875
29912.m005494 Ricinus communis 29912.m005494 N 0.844
Medtr6g099320 Medicago truncatula Medtr6g099320 N 0.812
mgf010847m Mimulus guttatus mgf010847m N 0.812
estExt_fgenesh2_pg.C_130276 Selaginella moellendorfii estExt_fgenesh2_pg.C_130276 N 0.781
MDP0000244800 Malus x domestica MDP0000244800 N 0.750
MDP0000457070 Malus x domestica MDP0000457070 N 0.750
LOC_Os02g17470 Oryza sativa LOC_Os02g17470 N 0.719
estExt_fgenesh1_pg.C_690026 Physcomitrella patens estExt_fgenesh1_pg.C_690026 N 0.719
BRADI1G41430 Brachypodium distachyon BRADI1G41430 N 0.719
BGIOSIBCE006465 Oryza indica BGIOSIBCE006465 N 0.719
estExt_fgenesh2_pg.C_350120 Selaginella moellendorfii estExt_fgenesh2_pg.C_350120 N 0.719
XM_002869414.1 Arabidopsis lyrata scaffold_701356.1 N 0.719