CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pg.C_350120
(
Selaginella moellendorfii
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
estExt_fgenesh2_pg.C_350120
T27419_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_350120
RanBP ZF
316
347
REGDWICSEPTCGNLNFARRSNCNSCQRPRHP
Links
Other
RanBP ZF
family RBPs
Other
Selaginella moellendorfii
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_pg.C_130276
Selaginella moellendorfii
estExt_fgenesh2_pg.C_130276
N
0.781
estExt_fgenesh1_pg.C_690026
Physcomitrella patens
estExt_fgenesh1_pg.C_690026
N
0.781
cassava29937.valid.m1
Manihot esculenta
cassava29937.valid.m1
N
0.750
B9N7C3_POPTR
Populus trichocarpa
POPTR_0006s16350
N
0.750
29912.m005494
Ricinus communis
29912.m005494
N
0.719
B9ILP3_POPTR
Populus trichocarpa
POPTR_0018s08970
N
0.719
BGIOSIBCE006465
Oryza indica
BGIOSIBCE006465
N
0.719
LOC_Os02g17470
Oryza sativa
LOC_Os02g17470
N
0.719
mgf010847m
Mimulus guttatus
mgf010847m
N
0.719