cassava29937.valid.m1 (Manihot esculenta)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 cassava29937.valid.m1 T27316_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava29937.valid.m1 RanBP ZF 157 188

Links

Other RanBP ZF family RBPs
Other Manihot esculenta RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N7C3_POPTR Populus trichocarpa POPTR_0006s16350 N 0.969
29912.m005494 Ricinus communis 29912.m005494 N 0.938
B9ILP3_POPTR Populus trichocarpa POPTR_0018s08970 N 0.875
MDP0000244800 Malus x domestica MDP0000244800 N 0.812
MDP0000457070 Malus x domestica MDP0000457070 N 0.812
mgf010847m Mimulus guttatus mgf010847m N 0.812
XM_002869414.1 Arabidopsis lyrata scaffold_701356.1 N 0.750
estExt_fgenesh1_pg.C_690026 Physcomitrella patens estExt_fgenesh1_pg.C_690026 N 0.750
ppa007541m Prunus persica ppa007541m N 0.750
Medtr6g099320 Medicago truncatula Medtr6g099320 N 0.750
estExt_fgenesh2_pg.C_350120 Selaginella moellendorfii estExt_fgenesh2_pg.C_350120 N 0.750
estExt_fgenesh2_pg.C_130276 Selaginella moellendorfii estExt_fgenesh2_pg.C_130276 N 0.750
MDP0000462264 Malus x domestica MDP0000462264 N 0.750
LOC_Os02g17470 Oryza sativa LOC_Os02g17470 N 0.719
BRADI1G41430 Brachypodium distachyon BRADI1G41430 N 0.719
GSVIVG00015362001 Vitis vinifera GSVIVG00015362001 N 0.719
BGIOSIBCE006465 Oryza indica BGIOSIBCE006465 N 0.719