CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AMAG_02330
(
Allomyces macrogynus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AMAG_02330
T27970_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AMAG_02330T0
RRM
21
88
LMVRNLPFKVSAEEMFELFGQYGAIRQIRLGDTNETKGTAFVVYEDIFDAKTACERLSGYNMMGRYLI
Links
Other
RRM
family RBPs
Other
Allomyces macrogynus
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AMAG_00826
Allomyces macrogynus
AMAG_00826
N
1.000
estExt_fgenesh1_pg.C_120176
Monosiga brevicollis
estExt_fgenesh1_pg.C_120176
N
0.735
estExt_fgenesh1_pg.C_130126
Phytophthora capsici
estExt_fgenesh1_pg.C_130126
N
0.706
s_454910
Phytophthora sojae
s_454910
N
0.706
estExt_fgeneshPB_pg.C_50297
Phycomyces blakesleeanus
estExt_fgeneshPB_pg.C_50297
N
0.706
SPPG_04286
Spizellomyces punctatus
SPPG_04286
N
0.706
PITG_10282
Phytophthora infestans
PITG_10282
N
0.706