estExt_fgeneshPB_pg.C_50297 (Phycomyces blakesleeanus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgeneshPB_pg.C_50297 T51136_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgeneshPB_pg.C_50297 RRM 21 88

Links

Other RRM family RBPs
Other Phycomyces blakesleeanus RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.956
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.941
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.794
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.779
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.768
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.768
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.768
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.768
PHUM617060 Pediculus humanus PHUM617060 N 0.768
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.768
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.768
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.765
LOAG_04189 Loa loa LOAG_04189 N 0.765
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.754
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.754
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.754
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.754
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.754
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.754
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.754
sf3b14 Danio rerio ENSDARG00000009753 N 0.754
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.754
LOC100056247 Equus caballus ENSECAG00000015618 N 0.754
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.754
SF3B14 Gallus gallus ENSGALG00000016501 N 0.754
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.754
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.754
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.754
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.754
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.754
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.754
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.754
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.754
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.754
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.754
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.754
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.754
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.754
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.754
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.754
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.754
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.754
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.754
AC008073.5 Homo sapiens ENSG00000115128 N 0.754
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.754
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.754
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.739
AAEL005909 Aedes aegypti AAEL005909 N 0.739
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.739
Minc01156 Meloidogyne incognita Minc01156 N 0.739
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.739
ISCW024082 Ixodes scapularis ISCW024082 N 0.739
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.739
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.739
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.739
CRE22109 Caenorhabditis remanei CRE22109 N 0.739
CBN08400 Caenorhabditis brenneri CBN08400 N 0.739
CJA01433 Caenorhabditis japonica CJA01433 N 0.739
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.739
CBG06987 Caenorhabditis briggsae CBG06987 N 0.739
GF10910 Drosophila ananassae FBgn0087950 N 0.735
GG14070 Drosophila erecta FBgn0106332 N 0.735
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.735
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.735
GE20495 Drosophila yakuba FBgn0068445 N 0.735
CG13298 Drosophila melanogaster FBgn0035692 N 0.735
GD13137 Drosophila simulans FBgn0184859 N 0.735
GK17258 Drosophila willistoni FBgn0219257 N 0.735
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.735
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.735
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.735
GJ12004 Drosophila virilis FBgn0199256 N 0.735
s_454910 Phytophthora sojae s_454910 N 0.735
GI13232 Drosophila mojavensis FBgn0135989 N 0.735
GL22529 Drosophila persimilis FBgn0160121 N 0.735
GM13852 Drosophila sechellia FBgn0168783 N 0.735
GH16287 Drosophila grimshawi FBgn0123758 N 0.735
mgf016428m Mimulus guttatus mgf016428m N 0.735
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.735
PITG_10282 Phytophthora infestans PITG_10282 N 0.735
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.725
68671 Helobdella robusta 68671 N 0.725
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.725
PPA24922 Pristionchus pacificus PPA24922 N 0.725
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.725
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.725
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.725
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.725
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.725
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.725
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.725
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.725
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.725
AAH57709 Xenopus laevis AAH57709 N 0.725
AGAP002780 Anopheles gambiae AGAP002780 N 0.725
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.725
160.m00066 Tetrahymena thermophila 160.m00066 N 0.721
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.721
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.721
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.721
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.721
TA13725 Theileria annulata TA13725 N 0.710
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.710
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.710
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.710
SB01G003790 Sorghum bicolor Sb01g003790 N 0.710
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.710
estExt_fgenesh1_pg.C_120176 Monosiga brevicollis estExt_fgenesh1_pg.C_120176 N 0.706
AMAG_00826 Allomyces macrogynus AMAG_00826 N 0.706
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.706
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.706
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.706
AMAG_02330 Allomyces macrogynus AMAG_02330 N 0.706