CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CNBG_4700
(
Cryptococcus neoformans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CNBG_4700
T28790_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CNBG_4700T0
RRM
13
82
LFVKNLNFNITGADLYDLFGKYGPIRQIRLGTDANLKTKGTAYVVFESPDDAKEAVNQLNGFHLMERYIV
Links
Other
RRM
family RBPs
Other
Cryptococcus neoformans
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_kg.C_40528
Agaricus bisporus
estExt_fgenesh2_kg.C_40528
N
0.714
fgenesh1_pm.C_scaffold_1000427
Schizophyllum commune
fgenesh1_pm.C_scaffold_1000427
N
0.714
estExt_fgenesh2_pm.C_40077
Heterobasidion annosum
estExt_fgenesh2_pm.C_40077
N
0.714
genemark.5060_g
Pleurotus ostreatus
genemark.5060_g
N
0.700
EDP43472.1
Malassezia globosa
EDP43472.1
N
0.700
estExt_GeneWisePlus_human.C_40675
Laccaria bicolor
estExt_GeneWisePlus_human.C_40675
N
0.700