CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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EDP43472.1
(
Malassezia globosa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
EDP43472.1
T55998_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDP43472.1
RRM
15
82
LFVKNLNYNIHGADLYELFGRYGAIRQIRLGTSQQTRGTAFVVYEEANDAKNAIASLNGFHLMERYII
Links
Other
RRM
family RBPs
Other
Malassezia globosa
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
UM02609
Ustilago maydis
UM02609
N
0.721
fgenesh1_pg.C_scaffold_2000586
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_2000586
N
0.721
fgenesh1_pm.C_scaffold_1000427
Schizophyllum commune
fgenesh1_pm.C_scaffold_1000427
N
0.721
fgenesh3_pg.17__64
Postia placenta
fgenesh3_pg.17__64
N
0.721
estExt_fgenesh2_kg.C_40528
Agaricus bisporus
estExt_fgenesh2_kg.C_40528
N
0.721
PGTG_00327
Puccinia graminis
PGTG_00327
N
0.721
CC1G_00173
Coprinopsis cinerea
CC1G_00173
N
0.721
estExt_fgenesh2_pm.C_40077
Heterobasidion annosum
estExt_fgenesh2_pm.C_40077
N
0.721
genemark.5060_g
Pleurotus ostreatus
genemark.5060_g
N
0.706
EuGene.00070081
Melampsora laricis populina
EuGene.00070081
N
0.706
estExt_GeneWisePlus_human.C_40675
Laccaria bicolor
estExt_GeneWisePlus_human.C_40675
N
0.706
CNBG_4700
Cryptococcus neoformans
CNBG_4700
N
0.700