CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CTRG_04482
(
Candida tropicalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CTRG_04482
T29135_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CTRT_04482
RRM
42
112
VYVGNLSHFTTEEQIHELFSKCGAIDRIIMGLDRNKLTPCGFCFVIYRTEQGSLNAMKFLQSTVLDSQDIT
Links
Other
RRM
family RBPs
Other
Candida tropicalis
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
orf19.763
Candida albicans
orf19.763
N
0.958
Cd36_04540
Candida dubliniensis
Cd36_04540
N
0.930
CPAG_03622
Candida parapsilosis
CPAG_03622
N
0.901
LELG_01795
Lodderomyces elongisporus
LELG_01795
N
0.859
DEHA0D03344g
Debaryomyces hansenii
DEHA0D03344g
N
0.831
e_gwh1.1.1.1876.1
Pichia stipitis
e_gwh1.1.1.1876.1
N
0.831
CLUG_00492
Candida lusitaniae
CLUG_00492
N
0.817
PGUG_05130
Candida guilliermondii
PGUG_05130
N
0.803