CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LELG_01795
(
Lodderomyces elongisporus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
LELG_01795
T29523_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LELT_01795
RRM
42
112
VYVGNLSHFTTEEQIHELFMKSGPIDKIIMGLDRNKLTPCGFCFVIYRTEEGSLNAMKYLQATVLDGQNIS
Links
Other
RRM
family RBPs
Other
Lodderomyces elongisporus
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPAG_03622
Candida parapsilosis
CPAG_03622
N
0.887
CTRG_04482
Candida tropicalis
CTRG_04482
N
0.859
orf19.763
Candida albicans
orf19.763
N
0.859
Cd36_04540
Candida dubliniensis
Cd36_04540
N
0.845
e_gwh1.1.1.1876.1
Pichia stipitis
e_gwh1.1.1.1876.1
N
0.831
CLUG_00492
Candida lusitaniae
CLUG_00492
N
0.817
DEHA0D03344g
Debaryomyces hansenii
DEHA0D03344g
N
0.789
PGUG_05130
Candida guilliermondii
PGUG_05130
N
0.775
Kwal_11096
Kluyveromyces waltii
Kwal_11096
N
0.704