CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FGSG_10830
(
Fusarium graminearum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FGSG_10830
T29257_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FGSG_10830T0
RRM
70
140
IIVSNLPKDVSEQQIKDYFIQSVGPIKRVELVYGPNSQSRGVANVTFHKSDGASKAFQKLNGLLVDNRPIK
Links
Other
RRM
family RBPs
Other
Fusarium graminearum
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FVEG_11504
Fusarium verticillioides
FVEG_11504
N
0.958
GLRG_05141
Colletotrichum graminicola
GLRG_05141
N
0.817
fgenesh5_pg.C_scaffold_21000102
Trichoderma reesei
fgenesh5_pg.C_scaffold_21000102
N
0.803
VDBG_05239
Verticillium albo atrum
VDBG_05239
N
0.789
VDAG_08864
Verticillium dahliae
VDAG_08864
N
0.789
estExt_fgenesh2_kg.C_60127
Thielavia terrestris
estExt_fgenesh2_kg.C_60127
N
0.718
Pa_3_8710
Podospora anserina
Pa_3_8710
N
0.704
fgenesh1_kg.7_#_199_#_2561_2_CCWO_CCWP_EXTA
Myceliophthora thermophila
fgenesh1_kg.7_#_199_#_2561_2_CCWO_CCWP_EXTA
N
0.704