CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GLRG_05141
(
Colletotrichum graminicola
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GLRG_05141
T29417_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLRG_05141T0
RRM
71
141
VIVSNLPKDVNEQQIKEYFVTSVGPIKRVEISYGPNSVSRGIANITFREPDGASKAFQKLNGLLVDNRPIK
Links
Other
RRM
family RBPs
Other
Colletotrichum graminicola
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FVEG_11504
Fusarium verticillioides
FVEG_11504
N
0.859
VDBG_05239
Verticillium albo atrum
VDBG_05239
N
0.831
VDAG_08864
Verticillium dahliae
VDAG_08864
N
0.831
fgenesh5_pg.C_scaffold_21000102
Trichoderma reesei
fgenesh5_pg.C_scaffold_21000102
N
0.817
FGSG_10830
Fusarium graminearum
FGSG_10830
N
0.817
MGG_06668
Magnaporthe oryzae
MGG_06668
N
0.732
fgenesh1_kg.7_#_199_#_2561_2_CCWO_CCWP_EXTA
Myceliophthora thermophila
fgenesh1_kg.7_#_199_#_2561_2_CCWO_CCWP_EXTA
N
0.704