CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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UM03939
(
Ustilago maydis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
UM03939
T31292_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
UM03939
RRM
178
248
LYIGRLPKGFFEKQLKSYFTQFGQVTRLRVSRNKKTGASKHYAFIEFADRDVAKIVQETMHNYLIDGRLLQ
Links
Other
RRM
family RBPs
Other
Ustilago maydis
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SOCG_03680
Schizosaccharomyces octosporus
SOCG_03680
N
0.746
augustus-scaffold_1.g441
Schizophyllum commune
augustus-scaffold_1.g441
N
0.704
SPCC1827.05c
Schizosaccharomyces pombe
SPCC1827.05c
N
0.704