CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PK11881.1
(
Cannabis sativa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PK11881.1
T31677_0.6
Cannabis sativa genome (2012-Feb-20)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK11881.1
RRM
31
81
LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLERE
Links
Other
RRM
family RBPs
Other
Cannabis sativa
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000319973
Malus x domestica
MDP0000319973
N
0.718
ppa012381m
Prunus persica
ppa012381m
N
0.718
Medtr5g047590
Medicago truncatula
Medtr5g047590
N
0.718
MDP0000193642
Malus x domestica
MDP0000193642
N
0.718
Glyma02g13280.1
Glycine max
Glyma02g13280.1
N
0.718
MDP0000588137
Malus x domestica
MDP0000588137
N
0.704
Cucsa.327930
Cucumis sativus
Cucsa.327930
N
0.704
MDP0000271129
Malus x domestica
MDP0000271129
N
0.704
MDP0000219767
Malus x domestica
MDP0000219767
N
0.704
cassava7442.valid.m1
Manihot esculenta
cassava7442.valid.m1
N
0.704