CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s13678g2t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s13678g2t1
T32003_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s13678g2t1
RRM
161
232
VFCGKLPNTVFEDELIPLFEKCGKIYDLRLMMDPLSGTNRGYAFVTYTTKEEAERATVELDGYEIKPGKNIK
DGIL_AUG5s13678g2t1
RRM
242
309
LFIGNIPKSKGKEDIMEEFGKITSGLTEVIIYSSPDDRRKNRGFCFLEYDSHKAASVAKRRLSAPNYK
DGIL_AUG5s13678g2t1
RRM
337
399
LYVRNLTQEVTENRLKETFEVHGSVERVKKIKDYAFIHFNDRGCALKALEELNGSNLDGATLE
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PHUM268060
Pediculus humanus
PHUM268060
I
0.714
amel4_ncbi_hmm4283
Apis mellifera
amel4_ncbi_hmm4283
I
0.704
AAEL002879
Aedes aegypti
AAEL002879
I
0.704
nasonia_NCBI_hmm256414
Nasonia vitripennis
nasonia_NCBI_hmm256414
I
0.704